Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 AL162741.1-201ENST00000565563 1558 ntBASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC29.46■■■□□ 2.31
COL17A1Q9UMD9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 AC092865.5-201ENST00000545435 363 ntBASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC29.45■■■□□ 2.31
COL17A1Q9UMD9 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
COL17A1Q9UMD9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
COL17A1Q9UMD9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
COL17A1Q9UMD9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
COL17A1Q9UMD9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 AC012615.1-201ENST00000565797 1299 ntBASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL17A1Q9UMD9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 AL355385.1-201ENST00000606123 409 ntBASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL17A1Q9UMD9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AP000867.3-201ENST00000524675 377 ntBASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AL160286.2-201ENST00000567150 934 ntBASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 TP73-AS1-207ENST00000624167 988 ntBASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 TMEM179-206ENST00000616017 1645 ntBASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL17A1Q9UMD9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 LINC00265-3P-201ENST00000447588 903 ntBASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
COL17A1Q9UMD9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
COL17A1Q9UMD9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 LINC01465-201ENST00000408887 1940 ntBASIC29.39■■■□□ 2.3
COL17A1Q9UMD9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC29.39■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms