Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CHMP1AQ9HD42 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AC100791.3-201ENST00000617619 330 ntBASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AC105020.6-201ENST00000621523 1217 ntBASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHMP1AQ9HD42 AC106820.2-201ENST00000563775 3264 ntBASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 KRT18P68-201ENST00000392293 1000 ntBASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 AC069236.1-201ENST00000604339 616 ntBASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PTBP1P-201ENST00000554374 1601 ntBASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHMP1AQ9HD42 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
CHMP1AQ9HD42 AP001271.2-201ENST00000624018 1556 ntBASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHMP1AQ9HD42 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms