Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ZNF815P-204ENST00000434898 1737 ntBASIC20.9■□□□□ 0.94
CCDC42Q96M95 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC42Q96M95 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC42Q96M95 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
CCDC42Q96M95 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.89■□□□□ 0.94
CCDC42Q96M95 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 AC006333.2-201ENST00000607957 2099 ntBASIC20.89■□□□□ 0.93
CCDC42Q96M95 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC42Q96M95 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC42Q96M95 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 AL390719.1-204ENST00000412397 1219 ntBASIC20.88■□□□□ 0.93
CCDC42Q96M95 AC026271.2-201ENST00000428091 497 ntBASIC20.88■□□□□ 0.93
CCDC42Q96M95 AC133552.2-202ENST00000575694 574 ntBASIC20.88■□□□□ 0.93
CCDC42Q96M95 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC42Q96M95 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
CCDC42Q96M95 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC42Q96M95 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC42Q96M95 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC42Q96M95 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC42Q96M95 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 AC004911.1-201ENST00000416316 871 ntBASIC20.85■□□□□ 0.93
CCDC42Q96M95 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms