Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
ATG4AQ8WYN0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 AC006333.2-201ENST00000607957 2099 ntBASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.07■□□□□ 0.8
ATG4AQ8WYN0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 AC098934.4-201ENST00000564127 592 ntBASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.06■□□□□ 0.8
ATG4AQ8WYN0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 TSPY6P-201ENST00000448518 926 ntBASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 AC104417.2-201ENST00000562989 1793 ntBASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4AQ8WYN0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 AC092368.3-202ENST00000574180 1591 ntBASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4AQ8WYN0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms