Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 AC092368.3-202ENST00000574180 1591 ntBASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 AL049812.1-201ENST00000432563 2267 ntBASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.58■□□□□ 0.57
CLHC1Q8NHS4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.58■□□□□ 0.56
CLHC1Q8NHS4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 TEX21P-204ENST00000641479 1693 ntBASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 AL138781.1-201ENST00000566567 1274 ntBASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 MIR4758-201ENST00000577688 71 ntBASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLHC1Q8NHS4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 AC097658.1-201ENST00000475555 843 ntBASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 MYC-209ENST00000641252 345 ntBASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 AL161938.1-201ENST00000569833 2180 ntBASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLHC1Q8NHS4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLHC1Q8NHS4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLHC1Q8NHS4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.55■□□□□ 0.56
CLHC1Q8NHS4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms