Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT40Q6A162 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.46■■□□□ 1.19
KRT40Q6A162 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT40Q6A162 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.46■■□□□ 1.19
KRT40Q6A162 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT40Q6A162 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.19
KRT40Q6A162 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.19
KRT40Q6A162 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.45■■□□□ 1.19
KRT40Q6A162 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 KRT17P3-201ENST00000420566 1262 ntBASIC22.45■■□□□ 1.18
KRT40Q6A162 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.45■■□□□ 1.18
KRT40Q6A162 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.45■■□□□ 1.18
KRT40Q6A162 BX088651.1-201ENST00000540551 451 ntBASIC22.45■■□□□ 1.18
KRT40Q6A162 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.45■■□□□ 1.18
KRT40Q6A162 MTDHP1-201ENST00000605323 784 ntBASIC22.45■■□□□ 1.18
KRT40Q6A162 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 KRT8P8-201ENST00000434750 1448 ntBASIC22.45■■□□□ 1.18
KRT40Q6A162 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.45■■□□□ 1.18
KRT40Q6A162 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 ZNF815P-204ENST00000434898 1737 ntBASIC22.45■■□□□ 1.18
KRT40Q6A162 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT40Q6A162 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT40Q6A162 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.44■■□□□ 1.18
KRT40Q6A162 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
KRT40Q6A162 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.44■■□□□ 1.18
KRT40Q6A162 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.44■■□□□ 1.18
KRT40Q6A162 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.44■■□□□ 1.18
KRT40Q6A162 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.44■■□□□ 1.18
KRT40Q6A162 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.44■■□□□ 1.18
KRT40Q6A162 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
KRT40Q6A162 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC22.44■■□□□ 1.18
KRT40Q6A162 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT40Q6A162 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
KRT40Q6A162 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC22.43■■□□□ 1.18
KRT40Q6A162 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.43■■□□□ 1.18
KRT40Q6A162 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
KRT40Q6A162 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT40Q6A162 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT40Q6A162 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
KRT40Q6A162 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.42■■□□□ 1.18
KRT40Q6A162 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 TUBB8P6-201ENST00000436895 1288 ntBASIC22.42■■□□□ 1.18
KRT40Q6A162 PRKY-204ENST00000533551 1019 ntBASIC22.42■■□□□ 1.18
KRT40Q6A162 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.42■■□□□ 1.18
KRT40Q6A162 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.42■■□□□ 1.18
KRT40Q6A162 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT40Q6A162 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.41■■□□□ 1.18
KRT40Q6A162 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT40Q6A162 MDFI-202ENST00000373050 809 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT40Q6A162 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT40Q6A162 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms