Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 YBX1P10-201ENST00000444752 975 ntBASIC21.31■■□□□ 1
CCDC40Q4G0X9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CCDC40Q4G0X9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC40Q4G0X9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.29■■□□□ 1
CCDC40Q4G0X9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.29■■□□□ 1
CCDC40Q4G0X9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.29■■□□□ 1
CCDC40Q4G0X9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.29■■□□□ 1
CCDC40Q4G0X9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC40Q4G0X9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 AL121829.2-201ENST00000620908 328 ntBASIC21.29■■□□□ 1
CCDC40Q4G0X9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 ZNF815P-204ENST00000434898 1737 ntBASIC21.29■■□□□ 1
CCDC40Q4G0X9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC40Q4G0X9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 UNC93B4-201ENST00000505679 747 ntBASIC21.28■■□□□ 1
CCDC40Q4G0X9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC40Q4G0X9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.28■■□□□ 1
CCDC40Q4G0X9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC40Q4G0X9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.27■■□□□ 1
CCDC40Q4G0X9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms