Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
IRX4P78413 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
IRX4P78413 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
IRX4P78413 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
IRX4P78413 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.12■□□□□ 0.81
IRX4P78413 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.11■□□□□ 0.81
IRX4P78413 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.11■□□□□ 0.81
IRX4P78413 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.11■□□□□ 0.81
IRX4P78413 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
IRX4P78413 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
IRX4P78413 AP003071.4-201ENST00000562276 1284 ntBASIC20.11■□□□□ 0.81
IRX4P78413 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.11■□□□□ 0.81
IRX4P78413 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.11■□□□□ 0.81
IRX4P78413 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
IRX4P78413 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.11■□□□□ 0.81
IRX4P78413 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
IRX4P78413 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.11■□□□□ 0.81
IRX4P78413 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
IRX4P78413 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.1■□□□□ 0.81
IRX4P78413 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
IRX4P78413 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
IRX4P78413 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.1■□□□□ 0.81
IRX4P78413 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
IRX4P78413 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.1■□□□□ 0.81
IRX4P78413 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
IRX4P78413 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 MMP23A-201ENST00000234610 1017 ntBASIC20.09■□□□□ 0.81
IRX4P78413 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.09■□□□□ 0.81
IRX4P78413 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
IRX4P78413 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.09■□□□□ 0.81
IRX4P78413 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.09■□□□□ 0.81
IRX4P78413 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
IRX4P78413 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
IRX4P78413 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
IRX4P78413 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.08■□□□□ 0.81
IRX4P78413 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
IRX4P78413 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.08■□□□□ 0.81
IRX4P78413 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.08■□□□□ 0.81
IRX4P78413 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 DPP3P2-201ENST00000416030 1696 ntBASIC20.08■□□□□ 0.81
IRX4P78413 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
IRX4P78413 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.08■□□□□ 0.81
IRX4P78413 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.08■□□□□ 0.81
IRX4P78413 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
IRX4P78413 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms