Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 KRT18P68-201ENST00000392293 1000 ntBASIC17.73■□□□□ 0.43
CDH11P55287 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CDH11P55287 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.73■□□□□ 0.43
CDH11P55287 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 ESRRAP1-201ENST00000400596 1257 ntBASIC17.73■□□□□ 0.43
CDH11P55287 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.73■□□□□ 0.43
CDH11P55287 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
CDH11P55287 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
CDH11P55287 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH11P55287 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.73■□□□□ 0.43
CDH11P55287 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.73■□□□□ 0.43
CDH11P55287 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDH11P55287 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CDH11P55287 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.73■□□□□ 0.43
CDH11P55287 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH11P55287 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.72■□□□□ 0.43
CDH11P55287 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.72■□□□□ 0.43
CDH11P55287 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH11P55287 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH11P55287 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CDH11P55287 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
CDH11P55287 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
CDH11P55287 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH11P55287 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH11P55287 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.71■□□□□ 0.43
CDH11P55287 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH11P55287 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.71■□□□□ 0.43
CDH11P55287 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH11P55287 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.71■□□□□ 0.43
CDH11P55287 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDH11P55287 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CDH11P55287 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.7■□□□□ 0.42
CDH11P55287 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms