Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A4P53420 LINC01006-201ENST00000333319 2292 ntBASIC20.81■□□□□ 0.92
COL4A4P53420 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A4P53420 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.81■□□□□ 0.92
COL4A4P53420 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.81■□□□□ 0.92
COL4A4P53420 AP003041.3-201ENST00000527151 707 ntBASIC20.81■□□□□ 0.92
COL4A4P53420 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.81■□□□□ 0.92
COL4A4P53420 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.81■□□□□ 0.92
COL4A4P53420 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A4P53420 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A4P53420 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A4P53420 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A4P53420 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A4P53420 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A4P53420 NPAP1P7-201ENST00000613027 823 ntBASIC20.8■□□□□ 0.92
COL4A4P53420 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 TCF3P1-201ENST00000423021 1937 ntBASIC20.8■□□□□ 0.92
COL4A4P53420 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 KRT8P10-201ENST00000450021 1447 ntBASIC20.8■□□□□ 0.92
COL4A4P53420 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL4A4P53420 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A4P53420 SPDYE15P-201ENST00000424157 909 ntBASIC20.8■□□□□ 0.92
COL4A4P53420 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A4P53420 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A4P53420 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A4P53420 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A4P53420 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A4P53420 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A4P53420 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A4P53420 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
COL4A4P53420 AL023803.3-201ENST00000615559 522 ntBASIC20.8■□□□□ 0.92
COL4A4P53420 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A4P53420 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A4P53420 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A4P53420 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A4P53420 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A4P53420 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A4P53420 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A4P53420 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
COL4A4P53420 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
COL4A4P53420 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
COL4A4P53420 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A4P53420 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A4P53420 ATP5G2P1-201ENST00000433580 426 ntBASIC20.78■□□□□ 0.92
COL4A4P53420 SPDYE13P-201ENST00000445314 798 ntBASIC20.78■□□□□ 0.92
COL4A4P53420 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A4P53420 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A4P53420 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A4P53420 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A4P53420 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A4P53420 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL4A4P53420 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.77■□□□□ 0.92
COL4A4P53420 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A4P53420 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL4A4P53420 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
COL4A4P53420 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A4P53420 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A4P53420 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A4P53420 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A4P53420 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms