Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.17■□□□□ 0.82
PTPN9P43378 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.17■□□□□ 0.82
PTPN9P43378 AC142381.4-202ENST00000563973 229 ntBASIC20.17■□□□□ 0.82
PTPN9P43378 RARRES2P10-201ENST00000564312 460 ntBASIC20.17■□□□□ 0.82
PTPN9P43378 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.17■□□□□ 0.82
PTPN9P43378 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.17■□□□□ 0.82
PTPN9P43378 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PTPN9P43378 HTR7P1-201ENST00000538670 1336 ntBASIC20.17■□□□□ 0.82
PTPN9P43378 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.17■□□□□ 0.82
PTPN9P43378 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN9P43378 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN9P43378 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.17■□□□□ 0.82
PTPN9P43378 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.16■□□□□ 0.82
PTPN9P43378 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PTPN9P43378 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN9P43378 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN9P43378 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN9P43378 NIFKP9-201ENST00000419265 221 ntBASIC20.16■□□□□ 0.82
PTPN9P43378 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN9P43378 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
PTPN9P43378 AL160286.2-201ENST00000567150 934 ntBASIC20.16■□□□□ 0.82
PTPN9P43378 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.16■□□□□ 0.82
PTPN9P43378 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.16■□□□□ 0.82
PTPN9P43378 AL445675.2-201ENST00000620291 557 ntBASIC20.16■□□□□ 0.82
PTPN9P43378 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.16■□□□□ 0.82
PTPN9P43378 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PTPN9P43378 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
PTPN9P43378 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN9P43378 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN9P43378 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 AL353807.1-201ENST00000427475 662 ntBASIC20.15■□□□□ 0.82
PTPN9P43378 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN9P43378 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN9P43378 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.15■□□□□ 0.82
PTPN9P43378 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.15■□□□□ 0.82
PTPN9P43378 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN9P43378 LINC01465-201ENST00000408887 1940 ntBASIC20.15■□□□□ 0.82
PTPN9P43378 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN9P43378 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
PTPN9P43378 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTPN9P43378 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTPN9P43378 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN9P43378 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PTPN9P43378 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN9P43378 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN9P43378 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.14■□□□□ 0.81
PTPN9P43378 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.14■□□□□ 0.81
PTPN9P43378 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PTPN9P43378 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.14■□□□□ 0.81
PTPN9P43378 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTPN9P43378 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.13■□□□□ 0.81
PTPN9P43378 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
PTPN9P43378 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PTPN9P43378 AP002982.1-201ENST00000492365 877 ntBASIC20.13■□□□□ 0.81
PTPN9P43378 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.13■□□□□ 0.81
PTPN9P43378 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.13■□□□□ 0.81
PTPN9P43378 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.13■□□□□ 0.81
PTPN9P43378 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PTPN9P43378 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 AC141586.3-201ENST00000562166 1838 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms