Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KRT18P68-201ENST00000392293 1000 ntBASIC19.42■□□□□ 0.7
PTPN4P29074 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN4P29074 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN4P29074 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
PTPN4P29074 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
PTPN4P29074 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN4P29074 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.41■□□□□ 0.7
PTPN4P29074 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 DPP3P2-201ENST00000416030 1696 ntBASIC19.41■□□□□ 0.7
PTPN4P29074 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 AC060766.5-201ENST00000590539 871 ntBASIC19.41■□□□□ 0.7
PTPN4P29074 HLA-B-256ENST00000639848 1089 ntBASIC19.41■□□□□ 0.7
PTPN4P29074 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTPN4P29074 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN4P29074 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPN4P29074 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
PTPN4P29074 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPN4P29074 AC142381.4-202ENST00000563973 229 ntBASIC19.4■□□□□ 0.7
PTPN4P29074 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPN4P29074 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPN4P29074 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPN4P29074 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PTPN4P29074 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN4P29074 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
PTPN4P29074 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPN4P29074 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
PTPN4P29074 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.39■□□□□ 0.69
PTPN4P29074 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PTPN4P29074 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.39■□□□□ 0.69
PTPN4P29074 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.39■□□□□ 0.69
PTPN4P29074 AL158047.1-201ENST00000445918 881 ntBASIC19.39■□□□□ 0.69
PTPN4P29074 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PTPN4P29074 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.39■□□□□ 0.69
PTPN4P29074 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.39■□□□□ 0.69
PTPN4P29074 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.39■□□□□ 0.69
PTPN4P29074 CROCCP3-202ENST00000420820 1947 ntBASIC19.39■□□□□ 0.69
PTPN4P29074 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
PTPN4P29074 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PTPN4P29074 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN4P29074 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PTPN4P29074 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
PTPN4P29074 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.38■□□□□ 0.69
PTPN4P29074 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.38■□□□□ 0.69
PTPN4P29074 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.38■□□□□ 0.69
PTPN4P29074 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.38■□□□□ 0.69
PTPN4P29074 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms