Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 AP003041.3-201ENST00000527151 707 ntBASIC16.95■□□□□ 0.3
COL8A1P27658 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.95■□□□□ 0.3
COL8A1P27658 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
COL8A1P27658 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.95■□□□□ 0.3
COL8A1P27658 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.94■□□□□ 0.3
COL8A1P27658 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.94■□□□□ 0.3
COL8A1P27658 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 SPDYE13P-201ENST00000445314 798 ntBASIC16.94■□□□□ 0.3
COL8A1P27658 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.94■□□□□ 0.3
COL8A1P27658 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.94■□□□□ 0.3
COL8A1P27658 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.94■□□□□ 0.3
COL8A1P27658 GCSHP2-201ENST00000560971 527 ntBASIC16.94■□□□□ 0.3
COL8A1P27658 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL8A1P27658 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL8A1P27658 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.94■□□□□ 0.3
COL8A1P27658 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
COL8A1P27658 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL8A1P27658 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
COL8A1P27658 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL8A1P27658 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.93■□□□□ 0.3
COL8A1P27658 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL8A1P27658 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.93■□□□□ 0.3
COL8A1P27658 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.93■□□□□ 0.3
COL8A1P27658 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.93■□□□□ 0.3
COL8A1P27658 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.93■□□□□ 0.3
COL8A1P27658 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.93■□□□□ 0.3
COL8A1P27658 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
COL8A1P27658 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL8A1P27658 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL8A1P27658 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 KRT8P17-201ENST00000453110 1448 ntBASIC16.93■□□□□ 0.3
COL8A1P27658 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.93■□□□□ 0.3
COL8A1P27658 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL8A1P27658 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.93■□□□□ 0.3
COL8A1P27658 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.93■□□□□ 0.3
COL8A1P27658 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
COL8A1P27658 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
COL8A1P27658 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL8A1P27658 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 SPDYE15P-201ENST00000424157 909 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 AC079781.3-201ENST00000449110 356 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 AC104692.2-201ENST00000603054 253 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 AL732292.2-201ENST00000609649 430 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL8A1P27658 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 TFP1-202ENST00000475455 1573 ntBASIC16.92■□□□□ 0.3
COL8A1P27658 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.92■□□□□ 0.3
COL8A1P27658 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.92■□□□□ 0.3
COL8A1P27658 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.92■□□□□ 0.3
COL8A1P27658 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL8A1P27658 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms