Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
LDLRP01130 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LDLRP01130 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.68■□□□□ 0.58
LDLRP01130 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LDLRP01130 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.68■□□□□ 0.58
LDLRP01130 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.68■□□□□ 0.58
LDLRP01130 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.68■□□□□ 0.58
LDLRP01130 AC060766.5-201ENST00000590539 871 ntBASIC18.68■□□□□ 0.58
LDLRP01130 CYP2T3P-201ENST00000601990 817 ntBASIC18.68■□□□□ 0.58
LDLRP01130 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.68■□□□□ 0.58
LDLRP01130 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.68■□□□□ 0.58
LDLRP01130 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LDLRP01130 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.68■□□□□ 0.58
LDLRP01130 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.68■□□□□ 0.58
LDLRP01130 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDLRP01130 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LDLRP01130 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.67■□□□□ 0.58
LDLRP01130 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
LDLRP01130 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.67■□□□□ 0.58
LDLRP01130 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.67■□□□□ 0.58
LDLRP01130 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.67■□□□□ 0.58
LDLRP01130 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LDLRP01130 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.67■□□□□ 0.58
LDLRP01130 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LDLRP01130 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDLRP01130 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
LDLRP01130 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.66■□□□□ 0.58
LDLRP01130 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LDLRP01130 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.66■□□□□ 0.58
LDLRP01130 KRT18P21-201ENST00000515767 1272 ntBASIC18.66■□□□□ 0.58
LDLRP01130 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.66■□□□□ 0.58
LDLRP01130 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.66■□□□□ 0.58
LDLRP01130 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.66■□□□□ 0.58
LDLRP01130 HLA-B-256ENST00000639848 1089 ntBASIC18.66■□□□□ 0.58
LDLRP01130 HCG11-201ENST00000411553 5696 ntBASIC18.66■□□□□ 0.58
LDLRP01130 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LDLRP01130 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
LDLRP01130 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.66■□□□□ 0.58
LDLRP01130 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LDLRP01130 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDLRP01130 AC026471.1-201ENST00000564629 3026 ntBASIC18.66■□□□□ 0.58
LDLRP01130 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms