Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
LMX1BO60663 AC073912.3-201ENST00000624414 853 ntBASIC17.03■□□□□ 0.32
LMX1BO60663 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LMX1BO60663 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.03■□□□□ 0.32
LMX1BO60663 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
LMX1BO60663 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
LMX1BO60663 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1BO60663 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 AC120498.9-201ENST00000339021 3867 ntBASIC17.02■□□□□ 0.32
LMX1BO60663 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1BO60663 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 AC018553.1-201ENST00000616682 1458 ntBASIC17.02■□□□□ 0.32
LMX1BO60663 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
LMX1BO60663 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.02■□□□□ 0.32
LMX1BO60663 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.02■□□□□ 0.32
LMX1BO60663 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1BO60663 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.02■□□□□ 0.32
LMX1BO60663 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.02■□□□□ 0.32
LMX1BO60663 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LMX1BO60663 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LMX1BO60663 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
LMX1BO60663 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LMX1BO60663 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.02■□□□□ 0.31
LMX1BO60663 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LMX1BO60663 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LMX1BO60663 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.02■□□□□ 0.31
LMX1BO60663 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LMX1BO60663 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LMX1BO60663 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1BO60663 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.01■□□□□ 0.31
LMX1BO60663 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1BO60663 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LMX1BO60663 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1BO60663 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1BO60663 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.01■□□□□ 0.31
LMX1BO60663 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LMX1BO60663 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1BO60663 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
LMX1BO60663 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.01■□□□□ 0.31
LMX1BO60663 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17■□□□□ 0.31
LMX1BO60663 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17■□□□□ 0.31
LMX1BO60663 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms