Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.48■□□□□ 0.23
SDCBPO00560 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.48■□□□□ 0.23
SDCBPO00560 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.48■□□□□ 0.23
SDCBPO00560 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDCBPO00560 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SDCBPO00560 AC026471.1-201ENST00000564629 3026 ntBASIC16.47■□□□□ 0.23
SDCBPO00560 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.47■□□□□ 0.23
SDCBPO00560 AC006970.2-201ENST00000450065 779 ntBASIC16.47■□□□□ 0.23
SDCBPO00560 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.47■□□□□ 0.23
SDCBPO00560 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.47■□□□□ 0.23
SDCBPO00560 AL050303.2-201ENST00000619798 666 ntBASIC16.47■□□□□ 0.23
SDCBPO00560 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.47■□□□□ 0.23
SDCBPO00560 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SDCBPO00560 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.47■□□□□ 0.23
SDCBPO00560 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDCBPO00560 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.46■□□□□ 0.23
SDCBPO00560 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.46■□□□□ 0.23
SDCBPO00560 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.46■□□□□ 0.23
SDCBPO00560 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SDCBPO00560 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SDCBPO00560 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDCBPO00560 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
SDCBPO00560 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SDCBPO00560 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDCBPO00560 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.46■□□□□ 0.22
SDCBPO00560 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDCBPO00560 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SDCBPO00560 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SDCBPO00560 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 AL138781.2-201ENST00000617896 1843 ntBASIC16.45■□□□□ 0.22
SDCBPO00560 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms