Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CBX4O00257 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CBX4O00257 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CBX4O00257 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.84■□□□□ 0.77
CBX4O00257 AC026471.5-201ENST00000615068 467 ntBASIC19.84■□□□□ 0.77
CBX4O00257 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CBX4O00257 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.84■□□□□ 0.77
CBX4O00257 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.84■□□□□ 0.77
CBX4O00257 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
CBX4O00257 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 AC125437.2-201ENST00000625180 2167 ntBASIC19.84■□□□□ 0.77
CBX4O00257 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.84■□□□□ 0.77
CBX4O00257 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CBX4O00257 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CBX4O00257 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CBX4O00257 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CBX4O00257 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CBX4O00257 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
CBX4O00257 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CBX4O00257 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.83■□□□□ 0.77
CBX4O00257 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.83■□□□□ 0.77
CBX4O00257 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.83■□□□□ 0.77
CBX4O00257 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.83■□□□□ 0.77
CBX4O00257 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.83■□□□□ 0.77
CBX4O00257 AC133561.5-201ENST00000635547 218 ntBASIC19.83■□□□□ 0.77
CBX4O00257 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CBX4O00257 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.83■□□□□ 0.76
CBX4O00257 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.83■□□□□ 0.76
CBX4O00257 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CBX4O00257 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.82■□□□□ 0.76
CBX4O00257 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.82■□□□□ 0.76
CBX4O00257 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 AP003071.4-201ENST00000562276 1284 ntBASIC19.82■□□□□ 0.76
CBX4O00257 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.82■□□□□ 0.76
CBX4O00257 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.82■□□□□ 0.76
CBX4O00257 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.82■□□□□ 0.76
CBX4O00257 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.82■□□□□ 0.76
CBX4O00257 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.82■□□□□ 0.76
CBX4O00257 LINC01465-201ENST00000408887 1940 ntBASIC19.82■□□□□ 0.76
CBX4O00257 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.82■□□□□ 0.76
CBX4O00257 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CBX4O00257 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CBX4O00257 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.82■□□□□ 0.76
CBX4O00257 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CBX4O00257 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
CBX4O00257 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.81■□□□□ 0.76
CBX4O00257 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.81■□□□□ 0.76
CBX4O00257 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.81■□□□□ 0.76
CBX4O00257 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.81■□□□□ 0.76
CBX4O00257 AC131212.4-201ENST00000623606 975 ntBASIC19.81■□□□□ 0.76
CBX4O00257 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.81■□□□□ 0.76
CBX4O00257 AL031985.4-201ENST00000642138 673 ntBASIC19.81■□□□□ 0.76
CBX4O00257 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CBX4O00257 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CBX4O00257 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CBX4O00257 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.8■□□□□ 0.76
CBX4O00257 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.8■□□□□ 0.76
CBX4O00257 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.8■□□□□ 0.76
CBX4O00257 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.8■□□□□ 0.76
CBX4O00257 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms