Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
HLA-CQ95604 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HLA-CQ95604 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
HLA-CQ95604 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HLA-CQ95604 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HLA-CQ95604 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AL096816.1-201ENST00000623300 2920 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AL023806.3-201ENST00000638502 2704 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 RPL32P3-201ENST00000359025 275 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 RNU6-593P-201ENST00000364716 112 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 SNORA51.6-201ENST00000384151 125 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 ARF4P3-201ENST00000397387 509 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AL360182.1-201ENST00000397433 468 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 RPL7AP14-201ENST00000424041 802 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 TEX41-206ENST00000432608 661 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC108734.1-201ENST00000439549 399 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 RPL23AP28-201ENST00000448062 470 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 NANOGP10-201ENST00000453325 895 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 RPL5P30-201ENST00000465511 891 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC055855.1-201ENST00000489563 579 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AL390198.2-201ENST00000510553 222 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 RANP9-201ENST00000519957 271 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 NRBF2P4-201ENST00000520874 850 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.12□□□□□ -1.27
HLA-CQ95604 CYCSP25-201ENST00000525280 316 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC140063.1-201ENST00000541343 259 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 AF038458.1-201ENST00000588406 262 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 MRPS5P4-201ENST00000592830 325 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 AC020914.7-201ENST00000594477 545 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 Six3os1_1.1-201ENST00000620900 87 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 XRCC6P5-201ENST00000435236 1795 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC7.12□□□□□ -1.27
HLA-CQ95604 KARSP2-201ENST00000415696 1639 ntBASIC7.12□□□□□ -1.27
HLA-CQ95604 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HLA-CQ95604 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.12□□□□□ -1.27
HLA-CQ95604 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
HLA-CQ95604 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC7.11□□□□□ -1.27
HLA-CQ95604 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 AC012360.3-201ENST00000610036 3449 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.11□□□□□ -1.27
HLA-CQ95604 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
HLA-CQ95604 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC7.11□□□□□ -1.27
HLA-CQ95604 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
HLA-CQ95604 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 GTF2H1-201ENST00000265963 2982 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HLA-CQ95604 RNU6-82P-201ENST00000363970 107 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 RNU1-84P-201ENST00000365447 164 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 Y_RNA.364-201ENST00000365532 101 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
HLA-CQ95604 NMD3P2-201ENST00000421815 761 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC7.11□□□□□ -1.27
HLA-CQ95604 AL138799.3-201ENST00000438968 350 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 AL161722.1-201ENST00000446972 1032 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 COX4I1P2-201ENST00000447446 547 ntBASIC7.11□□□□□ -1.27
HLA-CQ95604 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC7.11□□□□□ -1.27
HLA-CQ95604 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC7.11□□□□□ -1.27
HLA-CQ95604 ZNF519P4-201ENST00000514008 125 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms