Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DBF4P1-201ENST00000412976 1892 ntBASIC4.58□□□□□ -1.68
SOX2P48431 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 CR381670.1-201ENST00000624291 1693 ntBASIC4.58□□□□□ -1.68
SOX2P48431 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 ANKRD20A17P-201ENST00000511745 1330 ntBASIC4.58□□□□□ -1.68
SOX2P48431 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 RNA5SP433-201ENST00000364491 114 ntBASIC4.58□□□□□ -1.68
SOX2P48431 Y_RNA.408-201ENST00000383987 102 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RNU6-253P-201ENST00000384730 105 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AL031577.2-201ENST00000404133 280 ntBASIC4.58□□□□□ -1.68
SOX2P48431 OR4K12P-201ENST00000406538 961 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RNU6-272P-201ENST00000411028 104 ntBASIC4.58□□□□□ -1.68
SOX2P48431 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.58□□□□□ -1.68
SOX2P48431 Z93019.1-201ENST00000416450 973 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AC234782.4-201ENST00000417646 1048 ntBASIC4.58□□□□□ -1.68
SOX2P48431 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AC010153.1-201ENST00000432862 727 ntBASIC4.58□□□□□ -1.68
SOX2P48431 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 AC105399.1-202ENST00000447303 205 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RPS27AP15-201ENST00000447672 466 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RPL7P59-201ENST00000447700 943 ntBASIC4.58□□□□□ -1.68
SOX2P48431 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 AC104634.1-201ENST00000452720 462 ntBASIC4.58□□□□□ -1.68
SOX2P48431 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AC005229.2-201ENST00000456995 399 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AC005165.2-201ENST00000466070 380 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RPL21P6-201ENST00000479171 504 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RPL7P6-201ENST00000480903 738 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AC011411.1-201ENST00000509592 876 ntBASIC4.58□□□□□ -1.68
SOX2P48431 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 CYCSP22-201ENST00000517555 339 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AP006245.2-201ENST00000522004 300 ntBASIC4.58□□□□□ -1.68
SOX2P48431 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX2P48431 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 AC103987.3-201ENST00000582071 292 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AF131215.7-201ENST00000602443 707 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 AC073348.1-201ENST00000623002 331 ntBASIC4.58□□□□□ -1.68
SOX2P48431 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.58□□□□□ -1.68
SOX2P48431 AP000648.2-201ENST00000624182 404 ntBASIC4.58□□□□□ -1.68
SOX2P48431 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 LINC01963-201ENST00000562038 3148 ntBASIC4.58□□□□□ -1.68
SOX2P48431 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX2P48431 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX2P48431 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX2P48431 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.57□□□□□ -1.68
SOX2P48431 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX2P48431 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 AL353743.4-201ENST00000422653 1547 ntBASIC4.57□□□□□ -1.68
SOX2P48431 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 NCLP2-201ENST00000416078 1462 ntBASIC4.57□□□□□ -1.68
SOX2P48431 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SOX2P48431 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 SCARNA15-201ENST00000607520 4325 ntBASIC4.57□□□□□ -1.68
SOX2P48431 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.57□□□□□ -1.68
SOX2P48431 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX2P48431 BTBD10P1-201ENST00000549824 1352 ntBASIC4.57□□□□□ -1.68
SOX2P48431 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX2P48431 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
SOX2P48431 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX2P48431 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SOX2P48431 AL512646.1-201ENST00000269395 1077 ntBASIC4.57□□□□□ -1.68
SOX2P48431 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX2P48431 MIR105-1-201ENST00000385222 81 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms