RNA–Protein interactions for RNA: ENST00000416078.1

NCLP2-201, Transcript of nucleolin pseudogene 2, humanhuman

BASIC

Gene NCLP2, Length 1,462 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCLP2-201ENST00000416078 AEBP2Q6ZN18 517 aaPredicted RBP26.57■■□□□ 1.84
NCLP2-201ENST00000416078 CHIC1Q5VXU3 224 aa25.07■■□□□ 1.6
NCLP2-201ENST00000416078 SENP3Q9H4L4 574 aaPredicted RBP23.11■■□□□ 1.29
NCLP2-201ENST00000416078 PHF23Q9BUL5 403 aaPredicted RBP22.52■■□□□ 1.2
NCLP2-201ENST00000416078 POTEDQ86YR6 584 aa22.36■■□□□ 1.17
NCLP2-201ENST00000416078 FOXD1Q16676 465 aa21.54■■□□□ 1.04
NCLP2-201ENST00000416078 MSH5O43196 834 aa20.86■□□□□ 0.93
NCLP2-201ENST00000416078 PIAS4Q8N2W9 510 aaPredicted RBP19.85■□□□□ 0.77
NCLP2-201ENST00000416078 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
NCLP2-201ENST00000416078 PPP6R1Q9UPN7 881 aa19.06■□□□□ 0.64
NCLP2-201ENST00000416078 ADRA2BP18089 450 aa18.94■□□□□ 0.62
NCLP2-201ENST00000416078 CACNB1Q02641 598 aaPredicted RBP18.58■□□□□ 0.57
NCLP2-201ENST00000416078 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.49
NCLP2-201ENST00000416078 MAPK8IP2Q13387 824 aaPredicted RBP17.75■□□□□ 0.43
NCLP2-201ENST00000416078 SCAF1Q9H7N4 1312 aaKnown RBP17.64■□□□□ 0.41
NCLP2-201ENST00000416078 RNF39Q9H2S5 420 aa17.56■□□□□ 0.4
NCLP2-201ENST00000416078 C1QBPQ07021 282 aaKnown RBP17.35■□□□□ 0.37
NCLP2-201ENST00000416078 DCAF8L1A6NGE4 600 aa17.31■□□□□ 0.36
NCLP2-201ENST00000416078 POTEHQ6S545 545 aa17.31■□□□□ 0.36
NCLP2-201ENST00000416078 HOXD11P31277 338 aaPredicted RBP16.93■□□□□ 0.3
NCLP2-201ENST00000416078 PPP4R3CPQ6ZMV5 832 aa16.82■□□□□ 0.28
NCLP2-201ENST00000416078 DNAJC5BQ9UF47 199 aa16.79■□□□□ 0.28
NCLP2-201ENST00000416078 RNF216Q9NWF9 866 aaPredicted RBP16.48■□□□□ 0.23
NCLP2-201ENST00000416078 CNKSR2Q8WXI2 1034 aa16.42■□□□□ 0.22
NCLP2-201ENST00000416078 NCBP3Q53F19 620 aaKnown RBP16.33■□□□□ 0.2
NCLP2-201ENST00000416078 KCNA4P22459 653 aa16.22■□□□□ 0.19
NCLP2-201ENST00000416078 NPM3O75607 178 aaKnown RBP16.1■□□□□ 0.17
NCLP2-201ENST00000416078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.1■□□□□ 0.17
NCLP2-201ENST00000416078 DSG3P32926 999 aa15.99■□□□□ 0.15
NCLP2-201ENST00000416078 CAPN15O75808 1086 aa15.78■□□□□ 0.12
NCLP2-201ENST00000416078 SP7Q8TDD2 431 aaPredicted RBP15.65■□□□□ 0.1
NCLP2-201ENST00000416078 SPINK5Q9NQ38 1064 aaPredicted RBP15.64■□□□□ 0.09
NCLP2-201ENST00000416078 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
NCLP2-201ENST00000416078 CHRDL2Q6WN34 429 aa15.5■□□□□ 0.07
NCLP2-201ENST00000416078 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.07
NCLP2-201ENST00000416078 SLC4A1APQ9BWU0 796 aaKnown RBP15.4■□□□□ 0.06
NCLP2-201ENST00000416078 APLP2Q06481 763 aa15.28■□□□□ 0.04
NCLP2-201ENST00000416078 SLC4A2P04920 1241 aa15.26■□□□□ 0.03
NCLP2-201ENST00000416078 ZNF219Q9P2Y4 722 aaPredicted RBP15.26■□□□□ 0.03
NCLP2-201ENST00000416078 ABCB7O75027 752 aa15.19■□□□□ 0.02
NCLP2-201ENST00000416078 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
NCLP2-201ENST00000416078 FOXD4L1Q9NU39 408 aa15.01□□□□□ -0.01
NCLP2-201ENST00000416078 ZBTB22O15209 634 aa14.94□□□□□ -0.02
NCLP2-201ENST00000416078 HAX1O00165 279 aa14.93□□□□□ -0.02
NCLP2-201ENST00000416078 MYCNP04198 464 aaPredicted RBP14.91□□□□□ -0.02
NCLP2-201ENST00000416078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
NCLP2-201ENST00000416078 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
NCLP2-201ENST00000416078 PIP4P2Q8N4L2 257 aa14.8□□□□□ -0.04
NCLP2-201ENST00000416078 AKT1S1Q96B36 256 aa14.78□□□□□ -0.04
NCLP2-201ENST00000416078 SAMD1Q6SPF0 538 aaPredicted RBP14.77□□□□□ -0.04
NCLP2-201ENST00000416078 PLSCR2Q9NRY7 297 aa14.74□□□□□ -0.05
NCLP2-201ENST00000416078 CSRNP3Q8WYN3 585 aa14.69□□□□□ -0.06
NCLP2-201ENST00000416078 EHMT2Q96KQ7 1210 aa14.68□□□□□ -0.06
NCLP2-201ENST00000416078 LHX8Q68G74 356 aa14.66□□□□□ -0.06
NCLP2-201ENST00000416078 FXR2P51116 673 aaKnown RBP eCLIP14.57□□□□□ -0.08
NCLP2-201ENST00000416078 ATXN8OSP0DMR3 200 aa14.55□□□□□ -0.08
NCLP2-201ENST00000416078 REM2Q8IYK8 340 aaPredicted RBP14.55□□□□□ -0.08
NCLP2-201ENST00000416078 POLA2Q14181 598 aa14.5□□□□□ -0.09
NCLP2-201ENST00000416078 EVX2Q03828 476 aa14.49□□□□□ -0.09
NCLP2-201ENST00000416078 ATF5Q9Y2D1 282 aaPredicted RBP14.47□□□□□ -0.09
NCLP2-201ENST00000416078 PITPNM1O00562 1244 aa14.36□□□□□ -0.11
NCLP2-201ENST00000416078 ZBTB12Q9Y330 459 aaPredicted RBP14.31□□□□□ -0.12
NCLP2-201ENST00000416078 GABBR2O75899 941 aa14.23□□□□□ -0.13
NCLP2-201ENST00000416078 C19orf67A6NJJ6 358 aa14.15□□□□□ -0.14
NCLP2-201ENST00000416078 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
NCLP2-201ENST00000416078 PRKAR2AP13861 404 aaKnown RBP14.01□□□□□ -0.17
NCLP2-201ENST00000416078 PCDH10Q9P2E7 1040 aa13.93□□□□□ -0.18
NCLP2-201ENST00000416078 FBLN2P98095 1184 aa13.87□□□□□ -0.19
NCLP2-201ENST00000416078 CLCN6P51797 869 aa13.87□□□□□ -0.19
NCLP2-201ENST00000416078 MKRN4PQ13434 485 aaPredicted RBP13.87□□□□□ -0.19
NCLP2-201ENST00000416078 POTEMA6NI47 508 aa13.84□□□□□ -0.19
NCLP2-201ENST00000416078 POTEIP0CG38 1075 aa13.83□□□□□ -0.2
NCLP2-201ENST00000416078 SPDYE1Q8NFV5 336 aaPredicted RBP13.76□□□□□ -0.21
NCLP2-201ENST00000416078 POTEGQ6S5H5 508 aa13.74□□□□□ -0.21
NCLP2-201ENST00000416078 SPDYE2BA6NHP3 402 aa13.67□□□□□ -0.22
NCLP2-201ENST00000416078 SPDYE6P0CI01 402 aa13.67□□□□□ -0.22
NCLP2-201ENST00000416078 SPDYE2Q495Y8 402 aa13.67□□□□□ -0.22
NCLP2-201ENST00000416078 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
NCLP2-201ENST00000416078 DCBLD2Q96PD2 775 aa13.64□□□□□ -0.23
NCLP2-201ENST00000416078 OTUD5Q96G74 571 aa13.6□□□□□ -0.23
NCLP2-201ENST00000416078 SSUH2Q9Y2M2 353 aa13.56□□□□□ -0.24
NCLP2-201ENST00000416078 CD44P16070 742 aaKnown RBP13.49□□□□□ -0.25
NCLP2-201ENST00000416078 ZNF692Q9BU19 519 aaPredicted RBP13.49□□□□□ -0.25
NCLP2-201ENST00000416078 CHADLQ6NUI6 762 aa13.46□□□□□ -0.25
NCLP2-201ENST00000416078 SPDYE4A6NLX3 237 aa13.42□□□□□ -0.26
NCLP2-201ENST00000416078 PRR29P0C7W0 189 aa13.35□□□□□ -0.27
NCLP2-201ENST00000416078 PABPN1Q86U42 306 aaKnown RBP eCLIP13.33□□□□□ -0.28
NCLP2-201ENST00000416078 POTEB2H3BUK9 544 aa13.31□□□□□ -0.28
NCLP2-201ENST00000416078 PROM2Q8N271 834 aa13.31□□□□□ -0.28
NCLP2-201ENST00000416078 ZNF579Q8NAF0 562 aaKnown RBP13.28□□□□□ -0.28
NCLP2-201ENST00000416078 FARP1Q9Y4F1 1045 aaPredicted RBP13.27□□□□□ -0.29
NCLP2-201ENST00000416078 FKBP8Q14318 412 aa13.25□□□□□ -0.29
NCLP2-201ENST00000416078 MAMSTRQ6ZN01 415 aa13.2□□□□□ -0.3
NCLP2-201ENST00000416078 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
NCLP2-201ENST00000416078 FAM163AQ96GL9 167 aaPredicted RBP13.1□□□□□ -0.31
NCLP2-201ENST00000416078 ZRANB1Q9UGI0 708 aa13.1□□□□□ -0.31
NCLP2-201ENST00000416078 LCE2DQ5TA82 110 aaPredicted RBP13.1□□□□□ -0.31
NCLP2-201ENST00000416078 GALR2O43603 387 aaPredicted RBP13.08□□□□□ -0.32
NCLP2-201ENST00000416078 CDAN1Q8IWY9 1227 aa12.99□□□□□ -0.33
NCLP2-201ENST00000416078 C7P10643 843 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms