Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC095038.2-201ENST00000621464 1070 ntBASIC6.44□□□□□ -1.38
CUX1P39880 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CUX1P39880 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
CUX1P39880 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC6.44□□□□□ -1.38
CUX1P39880 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CUX1P39880 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC6.44□□□□□ -1.38
CUX1P39880 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
CUX1P39880 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
CUX1P39880 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC6.43□□□□□ -1.38
CUX1P39880 AL158156.1-201ENST00000422509 473 ntBASIC6.43□□□□□ -1.38
CUX1P39880 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.43□□□□□ -1.38
CUX1P39880 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC6.43□□□□□ -1.38
CUX1P39880 AC006960.3-201ENST00000561845 705 ntBASIC6.43□□□□□ -1.38
CUX1P39880 AC016839.1-201ENST00000578162 867 ntBASIC6.43□□□□□ -1.38
CUX1P39880 AC079880.2-201ENST00000603790 1213 ntBASIC6.43□□□□□ -1.38
CUX1P39880 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC6.43□□□□□ -1.38
CUX1P39880 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 AC007823.1-201ENST00000569932 1566 ntBASIC6.42□□□□□ -1.38
CUX1P39880 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
CUX1P39880 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
CUX1P39880 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 SNORA3C-201ENST00000408792 125 ntBASIC6.42□□□□□ -1.38
CUX1P39880 AC096664.2-201ENST00000411843 406 ntBASIC6.42□□□□□ -1.38
CUX1P39880 SEPT7P8-201ENST00000413308 775 ntBASIC6.42□□□□□ -1.38
CUX1P39880 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 HMGB1P37-201ENST00000439613 609 ntBASIC6.42□□□□□ -1.38
CUX1P39880 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 RPL21P11-201ENST00000461458 483 ntBASIC6.42□□□□□ -1.38
CUX1P39880 HMGN1P11-201ENST00000508668 303 ntBASIC6.42□□□□□ -1.38
CUX1P39880 GMPSP1-201ENST00000514075 579 ntBASIC6.42□□□□□ -1.38
CUX1P39880 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC6.42□□□□□ -1.38
CUX1P39880 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC6.42□□□□□ -1.38
CUX1P39880 AC112198.2-201ENST00000426589 6996 ntBASIC6.42□□□□□ -1.38
CUX1P39880 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC6.42□□□□□ -1.38
CUX1P39880 SAMMSON-213ENST00000641336 1521 ntBASIC6.42□□□□□ -1.38
CUX1P39880 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.42□□□□□ -1.38
CUX1P39880 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CUX1P39880 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CUX1P39880 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC6.41□□□□□ -1.38
CUX1P39880 SNORD9-201ENST00000362566 104 ntBASIC6.41□□□□□ -1.38
CUX1P39880 U3.23-201ENST00000391132 200 ntBASIC6.41□□□□□ -1.38
CUX1P39880 APOOP2-201ENST00000461561 539 ntBASIC6.41□□□□□ -1.38
CUX1P39880 RN7SL601P-201ENST00000471221 293 ntBASIC6.41□□□□□ -1.38
CUX1P39880 DEFB109D-201ENST00000529497 240 ntBASIC6.41□□□□□ -1.38
CUX1P39880 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC6.41□□□□□ -1.38
CUX1P39880 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CUX1P39880 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CUX1P39880 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CUX1P39880 ZNF833P-201ENST00000424938 1494 ntBASIC6.41□□□□□ -1.38
CUX1P39880 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CUX1P39880 AL035425.3-201ENST00000564206 4996 ntBASIC6.41□□□□□ -1.38
CUX1P39880 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC6.41□□□□□ -1.38
CUX1P39880 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC6.41□□□□□ -1.38
CUX1P39880 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.41□□□□□ -1.38
CUX1P39880 RPL7AP73-201ENST00000413490 353 ntBASIC6.4□□□□□ -1.38
CUX1P39880 AC092641.1-201ENST00000440229 772 ntBASIC6.4□□□□□ -1.38
CUX1P39880 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC6.4□□□□□ -1.38
CUX1P39880 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.4□□□□□ -1.38
CUX1P39880 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC6.4□□□□□ -1.38
CUX1P39880 RNA5SP103-201ENST00000459503 118 ntBASIC6.4□□□□□ -1.38
CUX1P39880 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC6.4□□□□□ -1.38
CUX1P39880 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CUX1P39880 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC6.4□□□□□ -1.38
CUX1P39880 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC6.4□□□□□ -1.38
CUX1P39880 SNORA62.6-201ENST00000606322 83 ntBASIC6.4□□□□□ -1.38
CUX1P39880 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC6.4□□□□□ -1.38
CUX1P39880 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CUX1P39880 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
CUX1P39880 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CUX1P39880 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CUX1P39880 GEMIN8P3-201ENST00000445417 720 ntBASIC6.4□□□□□ -1.39
CUX1P39880 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC6.4□□□□□ -1.39
CUX1P39880 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.4□□□□□ -1.39
CUX1P39880 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC6.4□□□□□ -1.39
CUX1P39880 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC6.4□□□□□ -1.39
CUX1P39880 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC6.4□□□□□ -1.39
CUX1P39880 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
CUX1P39880 AL355596.1-201ENST00000565399 3996 ntBASIC6.4□□□□□ -1.39
CUX1P39880 MIR3124-201ENST00000582636 67 ntBASIC6.4□□□□□ -1.39
CUX1P39880 AL773545.4-201ENST00000637262 310 ntBASIC6.4□□□□□ -1.39
CUX1P39880 AL513478.4-201ENST00000641636 310 ntBASIC6.4□□□□□ -1.39
CUX1P39880 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.39□□□□□ -1.39
CUX1P39880 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
CUX1P39880 CBX1P3-201ENST00000413296 527 ntBASIC6.39□□□□□ -1.39
CUX1P39880 AC005300.1-201ENST00000428401 373 ntBASIC6.39□□□□□ -1.39
CUX1P39880 ATP5JP1-201ENST00000431631 322 ntBASIC6.39□□□□□ -1.39
CUX1P39880 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.39□□□□□ -1.39
CUX1P39880 SNORA70.18-201ENST00000516696 98 ntBASIC6.39□□□□□ -1.39
CUX1P39880 AC027807.1-201ENST00000559921 996 ntBASIC6.39□□□□□ -1.39
CUX1P39880 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC6.39□□□□□ -1.39
CUX1P39880 AC244258.1-201ENST00000637553 1071 ntBASIC6.39□□□□□ -1.39
CUX1P39880 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CUX1P39880 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms