Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SNORA3.3-201ENST00000408712 125 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 VDAC1P9-201ENST00000412766 841 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 TRIM60P17-201ENST00000415181 719 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN4AP35499 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN4AP35499 AC005008.1-201ENST00000456151 612 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 RPL23AP65-201ENST00000475608 468 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 NDUFA5P2-201ENST00000519723 344 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 AC124068.1-201ENST00000563131 678 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 DPRXP4-201ENST00000578053 568 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 MIR5187-201ENST00000583479 76 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 MIR3922-201ENST00000585192 84 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN4AP35499 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN4AP35499 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN4AP35499 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.77□□□□□ -1.65
SCN4AP35499 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
SCN4AP35499 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.77□□□□□ -1.65
SCN4AP35499 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.77□□□□□ -1.65
SCN4AP35499 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.77□□□□□ -1.65
SCN4AP35499 AL158156.1-201ENST00000422509 473 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
SCN4AP35499 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.77□□□□□ -1.65
SCN4AP35499 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.77□□□□□ -1.65
SCN4AP35499 RN7SKP57-201ENST00000517248 293 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.77□□□□□ -1.65
SCN4AP35499 AC022882.1-201ENST00000532142 501 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.77□□□□□ -1.65
SCN4AP35499 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.77□□□□□ -1.65
SCN4AP35499 AL031666.3-201ENST00000609320 1006 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 AC140113.4-201ENST00000622087 222 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.77□□□□□ -1.65
SCN4AP35499 AC083899.2-201ENST00000423285 1376 ntBASIC4.77□□□□□ -1.65
SCN4AP35499 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN4AP35499 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.76□□□□□ -1.65
SCN4AP35499 RN7SKP167-201ENST00000411047 285 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 RPS29P4-201ENST00000414733 161 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 TCEA1P2-201ENST00000420496 906 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 RN7SL601P-201ENST00000471221 293 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 HMGN1P11-201ENST00000508668 303 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 RN7SKP289-201ENST00000517244 295 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.76□□□□□ -1.65
SCN4AP35499 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.76□□□□□ -1.65
SCN4AP35499 AC022146.1-201ENST00000595307 847 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 AC091167.4-201ENST00000605079 184 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SCN4AP35499 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SCN4AP35499 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.76□□□□□ -1.65
SCN4AP35499 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SCN4AP35499 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SCN4AP35499 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
SCN4AP35499 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SCN4AP35499 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SCN4AP35499 RNA5SP51-201ENST00000364750 119 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
SCN4AP35499 SNORD66.1-201ENST00000391230 76 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 AC236972.1-201ENST00000433225 199 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 SETP14-201ENST00000497538 873 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.76□□□□□ -1.65
SCN4AP35499 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 HMGB1P19-201ENST00000517578 577 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.76□□□□□ -1.65
SCN4AP35499 AC024224.1-201ENST00000538284 609 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.76□□□□□ -1.65
SCN4AP35499 MIR8058-201ENST00000615737 89 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.76□□□□□ -1.65
SCN4AP35499 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SCN4AP35499 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.76□□□□□ -1.65
SCN4AP35499 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SCN4AP35499 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.75□□□□□ -1.65
SCN4AP35499 CDY3P-201ENST00000454543 1618 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.75□□□□□ -1.65
SCN4AP35499 MIR490-201ENST00000384865 128 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 Z97055.1-201ENST00000419730 712 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 AL590609.2-201ENST00000421430 368 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.75□□□□□ -1.65
SCN4AP35499 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.75□□□□□ -1.65
SCN4AP35499 TCP11X3P-202ENST00000514289 1254 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC4.75□□□□□ -1.65
SCN4AP35499 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms