Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC3.96□□□□□ -1.78
COL5A1P20908 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A1P20908 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A1P20908 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A1P20908 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
COL5A1P20908 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
COL5A1P20908 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
COL5A1P20908 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
COL5A1P20908 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A1P20908 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 SNORA57.3-201ENST00000411095 141 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 RAD23BP3-201ENST00000454157 1152 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AC025554.1-201ENST00000505641 188 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 RN7SKP83-201ENST00000516512 178 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 RERGL-202ENST00000536890 367 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC104662.1-201ENST00000604448 511 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
COL5A1P20908 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 AL442128.2-201ENST00000620246 1824 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL5A1P20908 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 RNA5SP146-201ENST00000410743 123 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC104306.1-201ENST00000449702 371 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 PLGLA-201ENST00000465668 449 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC007688.1-201ENST00000475592 759 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 CAB39P1-201ENST00000502277 460 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 RNU6-352P-201ENST00000516908 107 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 SOD1P3-201ENST00000518682 454 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A1P20908 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A1P20908 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A1P20908 AL606490.9-201ENST00000603331 271 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AL049634.3-201ENST00000604968 457 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 AC096553.1-201ENST00000605169 829 ntBASIC3.95□□□□□ -1.78
COL5A1P20908 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A1P20908 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A1P20908 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
COL5A1P20908 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 IL6-203ENST00000401651 539 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A1P20908 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 EIF4EP1-201ENST00000422311 642 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A1P20908 CYCSP32-201ENST00000440548 321 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 FCF1P7-201ENST00000451185 558 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 SETP6-201ENST00000479329 568 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 ACTR3P3-201ENST00000480448 893 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 RNU1-103P-201ENST00000516502 125 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 AC114878.2-201ENST00000604863 1251 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A1P20908 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.94□□□□□ -1.78
COL5A1P20908 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A1P20908 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A1P20908 ZNF285B-201ENST00000561698 1767 ntBASIC3.93□□□□□ -1.78
COL5A1P20908 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC3.93□□□□□ -1.78
COL5A1P20908 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
COL5A1P20908 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.93□□□□□ -1.78
COL5A1P20908 HMGB3P19-201ENST00000403971 560 ntBASIC3.93□□□□□ -1.78
COL5A1P20908 VN1R8P-201ENST00000407739 893 ntBASIC3.93□□□□□ -1.78
COL5A1P20908 AC096664.2-201ENST00000411843 406 ntBASIC3.93□□□□□ -1.78
COL5A1P20908 DPPA2P2-201ENST00000418220 897 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms