Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 AL442639.1-201ENST00000625030 1899 ntBASIC4.81□□□□□ -1.64
PCDH9Q9HC56 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDH9Q9HC56 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 MIR142-201ENST00000384835 87 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 RN7SKP100-201ENST00000411258 284 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC010385.1-201ENST00000412374 256 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC009237.10-201ENST00000414112 510 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC044797.1-201ENST00000445744 679 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 EXOSC3P1-201ENST00000448649 500 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 RPL10P17-201ENST00000453852 316 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL133244.1-201ENST00000456007 258 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 NIP7P2-201ENST00000485801 544 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 SCARNA22-201ENST00000503991 125 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 RNA5SP446-201ENST00000515955 82 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 RN7SKP276-201ENST00000516242 268 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 UBE2FP2-201ENST00000566646 462 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AGGF1P5-201ENST00000567900 919 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL022067.1-201ENST00000602426 454 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL391358.1-201ENST00000605342 190 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC006946.3-201ENST00000609791 756 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL049539.1-201ENST00000611964 459 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AL356863.1-201ENST00000623378 1080 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 HSPD1P11-201ENST00000508643 1702 ntBASIC4.8□□□□□ -1.64
PCDH9Q9HC56 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDH9Q9HC56 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 ZNF29P-201ENST00000225587 168 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 RNU6-244P-201ENST00000391028 104 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AL133270.1-201ENST00000402635 279 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 RSU1P3-201ENST00000412878 835 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 UBE2V1P9-201ENST00000414760 368 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC005189.1-201ENST00000431286 310 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 RPS7P2-201ENST00000435134 607 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 RPL35AP28-201ENST00000459730 331 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC108022.1-201ENST00000493466 478 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 SNORA31.13-201ENST00000516624 135 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC027455.1-201ENST00000574104 594 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC091042.1-201ENST00000579213 173 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AL445435.1-201ENST00000604232 665 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AC091953.3-201ENST00000623220 236 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms