Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC021678.1-201ENST00000505195 936 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC108078.1-201ENST00000508073 725 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 SNORA18.6-201ENST00000516792 115 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 RN7SKP283-201ENST00000517197 270 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 TPM3P3-201ENST00000521343 354 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC104383.1-201ENST00000530297 370 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC079905.1-201ENST00000549280 475 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC141257.3-201ENST00000572906 215 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC112187.2-201ENST00000604345 283 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 RNU4-89P-201ENST00000607443 133 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AL136097.3-201ENST00000611097 505 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC012150.2-201ENST00000621300 544 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC004009.2-201ENST00000623016 728 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 GDI2P1-201ENST00000429312 1336 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 AL121768.1-201ENST00000613917 2544 ntBASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD1Q96NR3 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 MTND4P12-201ENST00000498999 1377 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC008033.1-201ENST00000216407 1162 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RNY4P14-201ENST00000363656 96 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RNU6-115P-201ENST00000364310 107 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RNU6-317P-201ENST00000384031 107 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 SNORA70.9-201ENST00000384370 135 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 U8.14-201ENST00000390843 143 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 MTCO3P40-201ENST00000392516 676 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RN7SKP151-201ENST00000410230 316 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RN7SKP240-201ENST00000410583 375 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 HMGA1P8-201ENST00000414130 321 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 C1DP2-201ENST00000418167 426 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 CLUHP1-201ENST00000435012 1190 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 H3F3BP1-201ENST00000440551 403 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RAB11AP1-201ENST00000442978 646 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 MTCO1P48-201ENST00000448024 1096 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 NDUFA5P7-201ENST00000452914 242 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC096741.1-201ENST00000472250 846 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC092865.4-201ENST00000477936 615 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC114728.1-201ENST00000488289 483 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC008628.2-201ENST00000502605 298 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC008429.4-201ENST00000521201 182 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 COX6B1P6-201ENST00000522347 255 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 OR5AQ1P-201ENST00000527596 927 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC007956.1-201ENST00000555623 542 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 RPA2P1-201ENST00000556557 721 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms