Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC007546.1-201ENST00000619452 559 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC011944.2-201ENST00000624440 683 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AL163152.1-201ENST00000642001 374 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 AC009313.2-201ENST00000417893 1941 ntBASIC4.44□□□□□ -1.7
LHX3Q9UBR4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.44□□□□□ -1.7
LHX3Q9UBR4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 MIR195-201ENST00000385194 87 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 SNORA11F-201ENST00000408237 128 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC009302.1-201ENST00000417147 390 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC004690.1-201ENST00000418216 328 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 RPS3AP54-201ENST00000435535 734 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 RPS27AP15-201ENST00000447672 466 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 RN7SL812P-201ENST00000493791 279 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC098799.1-201ENST00000504752 800 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC093840.1-201ENST00000511599 336 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC090151.1-201ENST00000520784 730 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 OR5BC1P-201ENST00000529327 739 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 ELOCP28-201ENST00000590044 317 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC006272.2-201ENST00000594725 163 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC005034.4-201ENST00000603612 899 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 OR4H6P-202ENST00000603819 340 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AL354984.3-201ENST00000604803 325 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AL445423.1-201ENST00000609941 536 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC025016.1-201ENST00000616746 682 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 MIR6758-201ENST00000620653 63 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 AC091948.2-201ENST00000636510 279 ntBASIC4.43□□□□□ -1.7
LHX3Q9UBR4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LHX3Q9UBR4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 OR4K17-201ENST00000315543 1032 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 RNU1-20P-201ENST00000363314 162 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL356057.1-202ENST00000402263 756 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL078604.1-201ENST00000404609 466 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 NCSTNP1-201ENST00000406229 144 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 P2RY10P2-201ENST00000416730 913 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AC048351.1-201ENST00000420064 602 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 GAPDHP49-201ENST00000421421 961 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL160175.1-201ENST00000428124 247 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 HMGB1P5-202ENST00000451497 985 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 CABYRP1-201ENST00000465493 1045 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 RPL35AP15-201ENST00000468042 339 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 RPL23AP65-201ENST00000475608 468 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 CEACAMP10-202ENST00000495431 496 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 HPRT1P1-201ENST00000509498 657 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 RNU6-1004P-201ENST00000516584 111 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AC068714.1-201ENST00000559623 800 ntBASIC4.42□□□□□ -1.7
LHX3Q9UBR4 AC090515.3-201ENST00000560431 315 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms