Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 MTCYBP19-201ENST00000517463 1124 ntBASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 TVP23BP1-201ENST00000557500 617 ntBASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 AC012603.1-201ENST00000606424 528 ntBASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
VPS29Q9UBQ0 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 IGKV7-3-201ENST00000357453 298 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RN7SKP182-201ENST00000410772 298 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RPL12P34-201ENST00000424532 479 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AL732292.1-201ENST00000426692 226 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RPS26P47-201ENST00000427219 348 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 MTCO1P51-201ENST00000427672 1060 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC068287.1-201ENST00000430283 295 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 CBX1P1-201ENST00000440184 427 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC069285.2-201ENST00000440210 275 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AL353748.1-201ENST00000440753 474 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RPS29P33-201ENST00000456717 146 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 RN7SL303P-201ENST00000469773 251 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC025674.1-201ENST00000507074 324 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC105233.3-201ENST00000531125 744 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 PSMB7P1-201ENST00000556349 514 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC008638.3-201ENST00000603341 463 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 ERCC6-202ENST00000374127 1782 ntBASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS29Q9UBQ0 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC018529.3-201ENST00000624212 2254 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 RNA5SP509-201ENST00000364577 119 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 RNA5SP513-201ENST00000364648 118 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 SNORA81-201ENST00000408493 178 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 RNU4-25P-201ENST00000410569 230 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC245028.1-201ENST00000423259 256 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 ACTR3P2-201ENST00000439585 1257 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC133473.1-201ENST00000455173 299 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 RNA5SP246-201ENST00000458909 119 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC011276.1-201ENST00000469688 323 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC096741.1-201ENST00000472250 846 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AF213884.1-201ENST00000488102 463 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 PPM1AP1-201ENST00000502740 1135 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 NDUFB4P12-201ENST00000513465 390 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 IGKV2-38-201ENST00000517443 247 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AL161729.3-201ENST00000603533 673 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 ZNF962P-201ENST00000443465 3140 ntBASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS29Q9UBQ0 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms