Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU4-1-201ENST00000363925 141 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RN7SKP191-201ENST00000364713 306 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RNU6-169P-201ENST00000365336 107 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL049697.2-201ENST00000403708 294 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL590635.1-201ENST00000406314 586 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RNU6-908P-201ENST00000410160 94 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RNU2-15P-201ENST00000410692 191 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RN7SKP188-201ENST00000410789 317 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RN7SKP296-201ENST00000411185 341 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 MRPL50P2-201ENST00000416821 482 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 TRBV29OR9-2-201ENST00000427589 333 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 OR4F13P-201ENST00000428478 931 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RPL23AP30-201ENST00000432419 501 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL606489.2-201ENST00000433886 234 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC012075.1-201ENST00000436549 580 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 MTND4LP16-201ENST00000440828 295 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL031681.1-201ENST00000443304 400 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 GAPDHP20-201ENST00000444107 1007 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SLC25A18P1-201ENST00000449385 454 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC010733.1-201ENST00000451515 401 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RN7SL809P-201ENST00000482040 297 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC055855.1-201ENST00000489563 579 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SCARNA11.1-201ENST00000516918 132 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 IGLVIV-53-201ENST00000520107 367 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 GLYCAM1-201ENST00000546596 285 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 GNG2-203ENST00000553432 577 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 MIR3146-201ENST00000580367 79 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 OR7E19P-202ENST00000589942 844 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC011497.2-201ENST00000600255 639 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL117336.2-201ENST00000602435 335 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL953862.2-201ENST00000603089 820 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 YWHAQP7-201ENST00000603536 658 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC010338.1-201ENST00000621823 717 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 YWHAEP7-203ENST00000622054 312 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL450226.2-201ENST00000622913 439 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC012254.5-201ENST00000623573 478 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC112204.3-201ENST00000623822 332 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC061999.1-201ENST00000624454 177 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL359697.1-201ENST00000624879 587 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC024614.3-201ENST00000637860 256 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC099654.10-201ENST00000640395 161 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC010168.2-201ENST00000562691 5428 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL512353.3-201ENST00000417517 1326 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AL139384.2-201ENST00000613809 3590 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC114546.3-201ENST00000623582 1734 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL117339.4-201ENST00000608335 7063 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC009220.2-201ENST00000489759 1751 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 MAPK10-357ENST00000641831 2858 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms