Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SNORA11.1-201ENST00000408133 129 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 SNRPFP1-201ENST00000414761 252 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 UBTFL3-201ENST00000418934 1024 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC011998.1-201ENST00000433403 117 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 RPS27AP15-201ENST00000447672 466 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AL935212.3-201ENST00000450729 284 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC012671.1-201ENST00000451912 203 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 UBTFL6-201ENST00000477929 1024 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.77□□□□□ -1.81
CHD3Q12873 CYCSP28-201ENST00000534284 321 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.77□□□□□ -1.81
CHD3Q12873 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.77□□□□□ -1.81
CHD3Q12873 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 AC244517.3-201ENST00000616254 1235 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CHD3Q12873 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CHD3Q12873 MIR3065-201ENST00000390137 79 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 PPIAP31-201ENST00000405422 495 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 FCF1P5-201ENST00000406490 482 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AL160275.2-201ENST00000412010 394 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.77□□□□□ -1.81
CHD3Q12873 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.77□□□□□ -1.81
CHD3Q12873 RPL23AP52-201ENST00000439311 478 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CHD3Q12873 DHFRP3-201ENST00000455595 559 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 RN7SL303P-201ENST00000469773 251 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AL132838.2-201ENST00000492041 314 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 TPT1P3-201ENST00000492841 512 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CHD3Q12873 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.77□□□□□ -1.81
CHD3Q12873 Z98200.1-201ENST00000607298 470 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC015813.4-201ENST00000610469 179 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 MIR6891-201ENST00000618788 93 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC007546.2-201ENST00000623996 360 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 AC008013.2-202ENST00000637965 364 ntBASIC3.77□□□□□ -1.81
CHD3Q12873 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
CHD3Q12873 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CHD3Q12873 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CHD3Q12873 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
CHD3Q12873 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CHD3Q12873 AL627171.1-201ENST00000618845 1308 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 EOGT-210ENST00000615922 1931 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CHD3Q12873 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.76□□□□□ -1.81
CHD3Q12873 NXPH1-205ENST00000602349 1953 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 OR52B1P-201ENST00000316506 909 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CHD3Q12873 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.76□□□□□ -1.81
CHD3Q12873 SDHCP2-201ENST00000398565 501 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 OR8G2P-201ENST00000412796 908 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.76□□□□□ -1.81
CHD3Q12873 DSTNP2-201ENST00000504533 515 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.76□□□□□ -1.81
CHD3Q12873 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.76□□□□□ -1.81
CHD3Q12873 AL358913.1-201ENST00000554342 121 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 RN7SL703P-201ENST00000578485 302 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 HMGB2P1-201ENST00000591146 634 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 AC074276.2-201ENST00000619891 348 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 AC039056.2-201ENST00000622261 511 ntBASIC3.76□□□□□ -1.81
CHD3Q12873 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CHD3Q12873 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
CHD3Q12873 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 RNA5SP513-201ENST00000364648 118 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 SNORA62.3-201ENST00000365110 153 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHD3Q12873 MT-RNR1-201ENST00000389680 954 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 Z98745.1-201ENST00000402553 494 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 SNORA74C-2-201ENST00000411179 201 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.75□□□□□ -1.81
CHD3Q12873 HMGB3P5-201ENST00000428894 612 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 NDUFA5P1-201ENST00000433858 341 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AC114495.1-201ENST00000441274 436 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 H2AFZP5-201ENST00000446960 382 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC3.75□□□□□ -1.81
CHD3Q12873 PRSS3P4-201ENST00000453323 162 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 AC079804.1-201ENST00000461922 436 ntBASIC3.75□□□□□ -1.81
CHD3Q12873 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.75□□□□□ -1.81
CHD3Q12873 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms