Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13CQ709C8 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13CQ709C8 RPL21P23-201ENST00000446654 460 ntBASIC3.24□□□□□ -1.89
VPS13CQ709C8 OR52Y1P-201ENST00000452418 828 ntBASIC3.24□□□□□ -1.89
VPS13CQ709C8 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS13CQ709C8 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS13CQ709C8 MTCO3P22-201ENST00000603219 784 ntBASIC3.24□□□□□ -1.89
VPS13CQ709C8 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 CDY3P-201ENST00000454543 1618 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 LRRC37A9P-201ENST00000603850 5376 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC112206.1-201ENST00000468416 477 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 MIR6715A-201ENST00000615929 79 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 EIF4A1P1-201ENST00000420241 934 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 RPS3AP46-201ENST00000448352 682 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC104619.4-201ENST00000510773 249 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC022695.1-201ENST00000522089 237 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 AL352979.3-201ENST00000553515 247 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC025627.2-201ENST00000576220 160 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 DDX18P6-201ENST00000450119 1997 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 RNA5SP97-201ENST00000365006 84 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC018635.1-201ENST00000468292 1030 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 RNA5SP497-201ENST00000516081 97 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS13CQ709C8 CYCSP30-201ENST00000546447 172 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 AC006960.3-201ENST00000561845 705 ntBASIC3.23□□□□□ -1.89
VPS13CQ709C8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13CQ709C8 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 HIGD1AP18-201ENST00000520730 278 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 SNX6P1-201ENST00000601728 1224 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 RNU6-301P-201ENST00000384277 107 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 APOOP2-201ENST00000461561 539 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 RNA5SP249-201ENST00000516127 99 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL034408.1-201ENST00000637712 664 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 MTCO1P45-201ENST00000431457 267 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 DDX39BP2-208ENST00000453923 258 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 RN7SKP57-201ENST00000517248 293 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 AC012493.2-201ENST00000595083 291 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 AC135507.2-201ENST00000612443 309 ntBASIC3.22□□□□□ -1.89
VPS13CQ709C8 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13CQ709C8 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13CQ709C8 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.89
VPS13CQ709C8 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms