Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 AC021146.4-201ENST00000309229 279 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 RPS3AP25-201ENST00000411660 793 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.82□□□□□ -1.8
CHD3Q12873 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 MTND4LP31-201ENST00000514859 294 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 IGKV2-23-201ENST00000518729 323 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC008739.3-201ENST00000603262 127 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AL354984.3-201ENST00000604803 325 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AC004777.1-201ENST00000624317 287 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AL049536.1-201ENST00000625043 744 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.81□□□□□ -1.8
CHD3Q12873 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.81□□□□□ -1.8
CHD3Q12873 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CHD3Q12873 AC011266.1-201ENST00000624119 3569 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 CPHL1P-201ENST00000461341 3407 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CHD3Q12873 IL6STP1-201ENST00000346911 1020 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 EIF4A1P3-201ENST00000411521 244 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 AC073136.2-201ENST00000417282 849 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.81□□□□□ -1.8
CHD3Q12873 AC091564.1-201ENST00000464563 479 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 AC091959.2-201ENST00000477363 321 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.81□□□□□ -1.8
CHD3Q12873 MIR2116-201ENST00000517221 80 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 AC099676.1-201ENST00000608886 657 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.81□□□□□ -1.8
CHD3Q12873 AL356121.2-201ENST00000624715 780 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.81□□□□□ -1.8
CHD3Q12873 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.81□□□□□ -1.8
CHD3Q12873 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.81□□□□□ -1.8
CHD3Q12873 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CHD3Q12873 AL606537.1-201ENST00000607258 2011 ntBASIC3.81□□□□□ -1.8
CHD3Q12873 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHD3Q12873 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 OR10J6P-201ENST00000289731 930 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 SPRR2C-201ENST00000290702 219 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 RNU6-525P-201ENST00000363685 104 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 RNA5SP366-201ENST00000365454 123 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC069157.1-201ENST00000421749 137 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 RPS27AP17-201ENST00000463344 455 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 RPS6P4-201ENST00000494693 758 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC098799.3-201ENST00000506095 438 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC010201.1-201ENST00000605051 540 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 AP005019.3-201ENST00000620418 560 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AC090506.2-201ENST00000624521 419 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CHD3Q12873 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CHD3Q12873 MUC2-202ENST00000613187 4845 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
CHD3Q12873 RPS20P14-201ENST00000412545 360 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 RPS12P10-201ENST00000427031 377 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 RPL7P33-201ENST00000444159 742 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 DDX39BP2-208ENST00000453923 258 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.8□□□□□ -1.8
CHD3Q12873 TRIM36-IT1-201ENST00000503723 881 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 HMGB3P13-201ENST00000511263 607 ntBASIC3.8□□□□□ -1.8
CHD3Q12873 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.8□□□□□ -1.8
CHD3Q12873 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHD3Q12873 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CHD3Q12873 AC090515.3-201ENST00000560431 315 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms