Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL034408.1-202ENST00000636088 415 ntBASIC6.81□□□□□ -1.32
CUX1P39880 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 Z82217.1-201ENST00000625157 8149 ntBASIC6.8□□□□□ -1.32
CUX1P39880 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
CUX1P39880 AC126323.6-202ENST00000568092 3511 ntBASIC6.8□□□□□ -1.32
CUX1P39880 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC6.8□□□□□ -1.32
CUX1P39880 RNA5SP22-201ENST00000365393 109 ntBASIC6.8□□□□□ -1.32
CUX1P39880 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CUX1P39880 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CUX1P39880 HMGB3P19-201ENST00000403971 560 ntBASIC6.8□□□□□ -1.32
CUX1P39880 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC6.8□□□□□ -1.32
CUX1P39880 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6.8□□□□□ -1.32
CUX1P39880 AC007967.1-201ENST00000455422 1159 ntBASIC6.8□□□□□ -1.32
CUX1P39880 RPL29P14-201ENST00000495837 428 ntBASIC6.8□□□□□ -1.32
CUX1P39880 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC6.8□□□□□ -1.32
CUX1P39880 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.8□□□□□ -1.32
CUX1P39880 TBCA-203ENST00000517679 545 ntTSL 3 BASIC6.8□□□□□ -1.32
CUX1P39880 AC005412.1-201ENST00000580812 1049 ntBASIC6.8□□□□□ -1.32
CUX1P39880 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.8□□□□□ -1.32
CUX1P39880 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC6.8□□□□□ -1.32
CUX1P39880 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6.8□□□□□ -1.32
CUX1P39880 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CUX1P39880 AL672167.1-203ENST00000641299 2975 ntBASIC6.79□□□□□ -1.32
CUX1P39880 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CUX1P39880 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.79□□□□□ -1.32
CUX1P39880 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CUX1P39880 CTSL3P-202ENST00000412179 788 ntBASIC6.79□□□□□ -1.32
CUX1P39880 AL139247.1-201ENST00000422768 325 ntBASIC6.79□□□□□ -1.32
CUX1P39880 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC6.79□□□□□ -1.32
CUX1P39880 SNRPCP3-201ENST00000474888 476 ntBASIC6.79□□□□□ -1.32
CUX1P39880 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC6.79□□□□□ -1.32
CUX1P39880 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC6.79□□□□□ -1.32
CUX1P39880 QTRT1P1-201ENST00000604344 1078 ntBASIC6.79□□□□□ -1.32
CUX1P39880 AC064801.1-201ENST00000612025 407 ntBASIC6.79□□□□□ -1.32
CUX1P39880 AC005858.4-201ENST00000623191 700 ntBASIC6.79□□□□□ -1.32
CUX1P39880 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
CUX1P39880 AC005005.4-201ENST00000623789 16698 ntBASIC6.79□□□□□ -1.32
CUX1P39880 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CUX1P39880 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
CUX1P39880 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.78□□□□□ -1.32
CUX1P39880 RPS26P2-201ENST00000440331 348 ntBASIC6.78□□□□□ -1.32
CUX1P39880 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.78□□□□□ -1.32
CUX1P39880 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 PPP1R11P1-201ENST00000486095 376 ntBASIC6.78□□□□□ -1.32
CUX1P39880 UBE2CP3-201ENST00000502715 450 ntBASIC6.78□□□□□ -1.32
CUX1P39880 RNA5SP179-201ENST00000517284 121 ntBASIC6.78□□□□□ -1.32
CUX1P39880 DUXAP2-201ENST00000519198 589 ntBASIC6.78□□□□□ -1.32
CUX1P39880 MTND1P6-201ENST00000523621 946 ntBASIC6.78□□□□□ -1.32
CUX1P39880 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC6.78□□□□□ -1.32
CUX1P39880 CYCSP30-201ENST00000546447 172 ntBASIC6.78□□□□□ -1.32
CUX1P39880 AC091516.1-201ENST00000549191 703 ntBASIC6.78□□□□□ -1.32
CUX1P39880 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 AF001550.2-201ENST00000636643 217 ntBASIC6.78□□□□□ -1.32
CUX1P39880 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.78□□□□□ -1.32
CUX1P39880 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
CUX1P39880 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC6.78□□□□□ -1.32
CUX1P39880 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CUX1P39880 AC093591.2-201ENST00000565254 3843 ntBASIC6.77□□□□□ -1.32
CUX1P39880 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 MIR483-201ENST00000385070 76 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC6.77□□□□□ -1.33
CUX1P39880 HMGN2P27-201ENST00000427352 270 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 AC083863.1-201ENST00000438811 231 ntBASIC6.77□□□□□ -1.33
CUX1P39880 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 CYCSP28-201ENST00000534284 321 ntBASIC6.77□□□□□ -1.33
CUX1P39880 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 MIR432-201ENST00000606207 94 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AL645927.2-201ENST00000618350 349 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AC007342.8-201ENST00000623278 678 ntBASIC6.77□□□□□ -1.33
CUX1P39880 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 AP000432.2-201ENST00000624164 2048 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AC007529.1-201ENST00000418574 2178 ntBASIC6.77□□□□□ -1.33
CUX1P39880 AL138820.1-201ENST00000617901 5305 ntBASIC6.77□□□□□ -1.33
CUX1P39880 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
CUX1P39880 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CUX1P39880 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC6.77□□□□□ -1.33
CUX1P39880 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
CUX1P39880 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 AC233289.1-201ENST00000403700 508 ntBASIC6.76□□□□□ -1.33
CUX1P39880 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.76□□□□□ -1.33
CUX1P39880 AL451050.1-201ENST00000450126 415 ntBASIC6.76□□□□□ -1.33
CUX1P39880 PLGLA-201ENST00000465668 449 ntBASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms