Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AC009171.1-201ENST00000572673 266 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 MIR4685-201ENST00000578185 69 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 FXYD6P1-201ENST00000604857 285 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 MIR6130-201ENST00000619419 109 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 AC027506.1-201ENST00000621395 198 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC9.12□□□□□ -0.95
HOXD11P31277 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
HOXD11P31277 CTAGE5-214ENST00000556148 2526 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 AL023806.3-201ENST00000638502 2704 ntBASIC9.12□□□□□ -0.95
HOXD11P31277 GID8-201ENST00000266069 4397 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 RGS4-204ENST00000421743 3311 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 POGK-202ENST00000367876 5754 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 COPS2-201ENST00000299259 2036 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 MAGI2-236ENST00000637441 5822 ntTSL 5 BASIC9.12□□□□□ -0.95
HOXD11P31277 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC9.12□□□□□ -0.95
HOXD11P31277 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
HOXD11P31277 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC9.11□□□□□ -0.95
HOXD11P31277 RSRC2-201ENST00000331738 3520 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
HOXD11P31277 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 ORC2-201ENST00000234296 4312 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC9.11□□□□□ -0.95
HOXD11P31277 PPP3CB-202ENST00000360663 3501 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 ZNF195-230ENST00000620374 3342 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
HOXD11P31277 CSGALNACT1-201ENST00000332246 3872 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 PIWIL2-201ENST00000356766 5128 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 RFFL-212ENST00000584655 4039 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 RNU6-1164P-201ENST00000364428 107 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 Y_RNA.393-201ENST00000383936 102 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 RNU6-1145P-201ENST00000384246 107 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
HOXD11P31277 RPS6KA2-IT1-201ENST00000416770 579 ntTSL 3 BASIC9.11□□□□□ -0.95
HOXD11P31277 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC9.11□□□□□ -0.95
HOXD11P31277 CFL1P8-201ENST00000436148 475 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 AC005077.3-202ENST00000437494 300 ntTSL 3 BASIC9.11□□□□□ -0.95
HOXD11P31277 Z93930.1-201ENST00000447099 245 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 U8.19-201ENST00000459095 133 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 AC026336.1-201ENST00000466577 351 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 NDUFB4-205ENST00000492739 309 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 AC008040.4-201ENST00000494834 768 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 AC010409.2-201ENST00000505780 478 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 AC006499.3-201ENST00000506077 748 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 AC010457.1-202ENST00000510137 337 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 RNU6-143P-201ENST00000516942 93 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 MIR1273C-201ENST00000578669 77 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 RN7SL697P-201ENST00000582484 299 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 DEFB117-201ENST00000602356 141 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 RNU6-84P-201ENST00000607737 102 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 SMLR1-201ENST00000541421 2512 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 SPATA31E1-201ENST00000325643 4478 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 PDE11A-202ENST00000389683 1781 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 TTLL3-221ENST00000455274 2848 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 ENTPD1-203ENST00000371207 1903 ntTSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 TRAF1-202ENST00000540010 4303 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC9.11□□□□□ -0.95
HOXD11P31277 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 AC106800.1-201ENST00000501221 1362 ntBASIC9.11□□□□□ -0.95
HOXD11P31277 CCR9-202ENST00000357632 2569 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
HOXD11P31277 RHOT1-210ENST00000581094 3231 ntTSL 2 BASIC9.1□□□□□ -0.95
HOXD11P31277 AC022034.2-201ENST00000426023 2387 ntTSL 2 BASIC9.1□□□□□ -0.95
HOXD11P31277 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 AC006600.2-201ENST00000624834 2506 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 HNRNPA1L2-201ENST00000357495 3011 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HOXD11P31277 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC9.1□□□□□ -0.95
HOXD11P31277 GJA5-203ENST00000621517 3183 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
HOXD11P31277 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 ABL2-206ENST00000504405 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
HOXD11P31277 DPF3-203ENST00000541685 4077 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC9.1□□□□□ -0.95
HOXD11P31277 MICB-204ENST00000538442 2411 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
HOXD11P31277 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HOXD11P31277 TNFSF14-201ENST00000245912 4336 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HOXD11P31277 RNU6-281P-201ENST00000384212 103 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 MIR329-1-201ENST00000385028 80 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 MIR626-201ENST00000385032 94 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 MIR15B-201ENST00000385045 98 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 RNU6-763P-201ENST00000390865 106 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 RNU6-554P-201ENST00000410466 106 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 AL451062.2-201ENST00000427515 271 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 HMGN2P32-201ENST00000444648 269 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 RN7SL799P-201ENST00000475891 298 ntBASIC9.1□□□□□ -0.95
HOXD11P31277 RN7SL335P-201ENST00000482790 304 ntBASIC9.1□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 297.4 ms