Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LSM4Q9Y4Z0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 KRT8P20-201ENST00000423953 1409 ntBASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 LSM12P1-201ENST00000411836 588 ntBASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 RPS2P4-201ENST00000476944 856 ntBASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LSM4Q9Y4Z0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LSM4Q9Y4Z0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 AL596275.1-201ENST00000423464 877 ntBASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 AP003097.1-201ENST00000530657 1135 ntBASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.51■□□□□ 0.07
LSM4Q9Y4Z0 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LSM4Q9Y4Z0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms