Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 AC004264.1-201ENST00000608354 794 ntBASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 BX323043.1-201ENST00000641006 1765 ntBASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS9D1Q9Y2B5 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS9D1Q9Y2B5 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 AC069544.1-201ENST00000609399 999 ntBASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VPS9D1Q9Y2B5 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
VPS9D1Q9Y2B5 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS9D1Q9Y2B5 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
VPS9D1Q9Y2B5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS9D1Q9Y2B5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
VPS9D1Q9Y2B5 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms