Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.52■□□□□ 0.71
DKK3Q9UBP4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
DKK3Q9UBP4 AC112907.3-201ENST00000577781 2400 ntBASIC19.52■□□□□ 0.71
DKK3Q9UBP4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.71
DKK3Q9UBP4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
DKK3Q9UBP4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 MESTP1-201ENST00000404287 994 ntBASIC19.51■□□□□ 0.71
DKK3Q9UBP4 RBM17P1-201ENST00000453646 1190 ntBASIC19.51■□□□□ 0.71
DKK3Q9UBP4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 MIR6786-201ENST00000616843 113 ntBASIC19.51■□□□□ 0.71
DKK3Q9UBP4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DKK3Q9UBP4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 B3GAT3P1-201ENST00000471720 806 ntBASIC19.5■□□□□ 0.71
DKK3Q9UBP4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 AL160286.2-201ENST00000567150 934 ntBASIC19.5■□□□□ 0.71
DKK3Q9UBP4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
DKK3Q9UBP4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 UNC93B2-201ENST00000285383 730 ntBASIC19.49■□□□□ 0.71
DKK3Q9UBP4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 AC011506.1-201ENST00000474329 610 ntBASIC19.49■□□□□ 0.71
DKK3Q9UBP4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 DGCR10-201ENST00000609839 495 ntBASIC19.49■□□□□ 0.71
DKK3Q9UBP4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DKK3Q9UBP4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.48■□□□□ 0.71
DKK3Q9UBP4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 Z85996.1-201ENST00000494644 937 ntBASIC19.48■□□□□ 0.71
DKK3Q9UBP4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.48■□□□□ 0.71
DKK3Q9UBP4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms