Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 ZNF815P-204ENST00000434898 1737 ntBASIC18.42■□□□□ 0.54
SCN3AQ9NY46 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 AL596275.1-201ENST00000423464 877 ntBASIC18.41■□□□□ 0.54
SCN3AQ9NY46 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 RPS2P4-201ENST00000476944 856 ntBASIC18.41■□□□□ 0.54
SCN3AQ9NY46 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 AC104417.2-201ENST00000562989 1793 ntBASIC18.41■□□□□ 0.54
SCN3AQ9NY46 TREX1-205ENST00000625293 1783 ntBASIC18.41■□□□□ 0.54
SCN3AQ9NY46 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN3AQ9NY46 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 AP002982.1-201ENST00000492365 877 ntBASIC18.4■□□□□ 0.54
SCN3AQ9NY46 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 REXO1L10P-201ENST00000615707 1290 ntBASIC18.4■□□□□ 0.54
SCN3AQ9NY46 REXO1L12P-201ENST00000622156 912 ntBASIC18.4■□□□□ 0.54
SCN3AQ9NY46 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 FAM197Y1-201ENST00000421178 764 ntBASIC18.4■□□□□ 0.54
SCN3AQ9NY46 SNORA78-201ENST00000459373 127 ntBASIC18.4■□□□□ 0.54
SCN3AQ9NY46 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.4■□□□□ 0.54
SCN3AQ9NY46 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SCN3AQ9NY46 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.39■□□□□ 0.54
SCN3AQ9NY46 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SCN3AQ9NY46 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.39■□□□□ 0.54
SCN3AQ9NY46 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SCN3AQ9NY46 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 MIR718-201ENST00000390190 70 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 CR392000.1-201ENST00000624770 1228 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AC011506.1-201ENST00000474329 610 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AC233702.5-201ENST00000584107 538 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AC073195.1-201ENST00000607241 877 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 AL031985.4-201ENST00000642138 673 ntBASIC18.39■□□□□ 0.53
SCN3AQ9NY46 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN3AQ9NY46 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN3AQ9NY46 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.38■□□□□ 0.53
SCN3AQ9NY46 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.38■□□□□ 0.53
SCN3AQ9NY46 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SCN3AQ9NY46 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN3AQ9NY46 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms