Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
HIPK3Q9H422 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HIPK3Q9H422 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.27■■□□□ 1
HIPK3Q9H422 LINC01465-201ENST00000408887 1940 ntBASIC21.27■■□□□ 1
HIPK3Q9H422 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.27■■□□□ 1
HIPK3Q9H422 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HIPK3Q9H422 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HIPK3Q9H422 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.26■□□□□ 0.99
HIPK3Q9H422 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HIPK3Q9H422 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HIPK3Q9H422 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 ZNF444P1-201ENST00000559497 298 ntBASIC21.25■□□□□ 0.99
HIPK3Q9H422 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HIPK3Q9H422 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HIPK3Q9H422 AC007375.3-201ENST00000600936 2314 ntBASIC21.24■□□□□ 0.99
HIPK3Q9H422 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 AC083849.1-201ENST00000615227 514 ntBASIC21.24■□□□□ 0.99
HIPK3Q9H422 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HIPK3Q9H422 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.24■□□□□ 0.99
HIPK3Q9H422 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 AC012313.10-201ENST00000623509 926 ntBASIC21.23■□□□□ 0.99
HIPK3Q9H422 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 KRT8P41-201ENST00000533985 1514 ntBASIC21.23■□□□□ 0.99
HIPK3Q9H422 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HIPK3Q9H422 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HIPK3Q9H422 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HIPK3Q9H422 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
HIPK3Q9H422 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms