Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC026271.3-201ENST00000571884 352 ntBASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RPAP1Q9BWH6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.6■■□□□ 1.37
RPAP1Q9BWH6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 MIR1238-201ENST00000408483 83 ntBASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RPAP1Q9BWH6 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 AC116562.4-201ENST00000641316 2276 ntBASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
RPAP1Q9BWH6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.58■■□□□ 1.36
RPAP1Q9BWH6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.58■■□□□ 1.36
RPAP1Q9BWH6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
RPAP1Q9BWH6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
RPAP1Q9BWH6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
RPAP1Q9BWH6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 AC005363.2-201ENST00000618631 242 ntBASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 CR392000.1-201ENST00000624770 1228 ntBASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.57■■□□□ 1.36
RPAP1Q9BWH6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 AL390955.1-201ENST00000428694 934 ntBASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
RPAP1Q9BWH6 POLI-202ENST00000406285 2030 ntTSL 2 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms