Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK1Q99986 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.12■□□□□ 0.33
VRK1Q99986 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK1Q99986 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VRK1Q99986 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VRK1Q99986 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
VRK1Q99986 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.12■□□□□ 0.33
VRK1Q99986 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.12■□□□□ 0.33
VRK1Q99986 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.12■□□□□ 0.33
VRK1Q99986 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK1Q99986 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK1Q99986 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.12■□□□□ 0.33
VRK1Q99986 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VRK1Q99986 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.11■□□□□ 0.33
VRK1Q99986 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 LETM1P2-201ENST00000597330 2178 ntBASIC17.11■□□□□ 0.33
VRK1Q99986 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.11■□□□□ 0.33
VRK1Q99986 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.11■□□□□ 0.33
VRK1Q99986 MIR718-201ENST00000390190 70 ntBASIC17.11■□□□□ 0.33
VRK1Q99986 AC239809.2-201ENST00000415381 517 ntBASIC17.11■□□□□ 0.33
VRK1Q99986 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK1Q99986 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.11■□□□□ 0.33
VRK1Q99986 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.11■□□□□ 0.33
VRK1Q99986 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK1Q99986 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK1Q99986 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
VRK1Q99986 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.11■□□□□ 0.33
VRK1Q99986 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
VRK1Q99986 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK1Q99986 FP700111.2-201ENST00000619190 1892 ntBASIC17.11■□□□□ 0.33
VRK1Q99986 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK1Q99986 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK1Q99986 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VRK1Q99986 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.1■□□□□ 0.33
VRK1Q99986 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VRK1Q99986 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 PRKY-204ENST00000533551 1019 ntBASIC17.1■□□□□ 0.33
VRK1Q99986 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 MTDHP1-201ENST00000605323 784 ntBASIC17.1■□□□□ 0.33
VRK1Q99986 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.1■□□□□ 0.33
VRK1Q99986 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VRK1Q99986 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK1Q99986 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK1Q99986 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
VRK1Q99986 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.09■□□□□ 0.33
VRK1Q99986 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.09■□□□□ 0.33
VRK1Q99986 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
VRK1Q99986 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.09■□□□□ 0.33
VRK1Q99986 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.09■□□□□ 0.33
VRK1Q99986 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.09■□□□□ 0.33
VRK1Q99986 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK1Q99986 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms