Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.04■□□□□ 0.32
COL12A1Q99715 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
COL12A1Q99715 TFP1-202ENST00000475455 1573 ntBASIC17.03■□□□□ 0.32
COL12A1Q99715 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.03■□□□□ 0.32
COL12A1Q99715 BX276092.5-203ENST00000456199 560 ntBASIC17.03■□□□□ 0.32
COL12A1Q99715 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.03■□□□□ 0.32
COL12A1Q99715 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.03■□□□□ 0.32
COL12A1Q99715 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.03■□□□□ 0.32
COL12A1Q99715 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.03■□□□□ 0.32
COL12A1Q99715 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.03■□□□□ 0.32
COL12A1Q99715 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.03■□□□□ 0.32
COL12A1Q99715 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.03■□□□□ 0.32
COL12A1Q99715 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.03■□□□□ 0.32
COL12A1Q99715 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.03■□□□□ 0.32
COL12A1Q99715 AC131212.4-201ENST00000623606 975 ntBASIC17.03■□□□□ 0.32
COL12A1Q99715 AC243591.1-201ENST00000452967 1364 ntBASIC17.03■□□□□ 0.32
COL12A1Q99715 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
COL12A1Q99715 AC018553.1-201ENST00000616682 1458 ntBASIC17.03■□□□□ 0.32
COL12A1Q99715 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL12A1Q99715 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL12A1Q99715 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.02■□□□□ 0.32
COL12A1Q99715 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.02■□□□□ 0.32
COL12A1Q99715 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.02■□□□□ 0.32
COL12A1Q99715 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 HLA-G-202ENST00000376815 851 ntBASIC17.02■□□□□ 0.32
COL12A1Q99715 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL12A1Q99715 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL12A1Q99715 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL12A1Q99715 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.02■□□□□ 0.31
COL12A1Q99715 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.02■□□□□ 0.31
COL12A1Q99715 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.02■□□□□ 0.31
COL12A1Q99715 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL12A1Q99715 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL12A1Q99715 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.02■□□□□ 0.31
COL12A1Q99715 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.01■□□□□ 0.31
COL12A1Q99715 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.01■□□□□ 0.31
COL12A1Q99715 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.01■□□□□ 0.31
COL12A1Q99715 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL12A1Q99715 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.01■□□□□ 0.31
COL12A1Q99715 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 AL162741.1-201ENST00000565563 1558 ntBASIC17.01■□□□□ 0.31
COL12A1Q99715 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL12A1Q99715 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.01■□□□□ 0.31
COL12A1Q99715 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.01■□□□□ 0.31
COL12A1Q99715 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.01■□□□□ 0.31
COL12A1Q99715 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.01■□□□□ 0.31
COL12A1Q99715 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.01■□□□□ 0.31
COL12A1Q99715 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.01■□□□□ 0.31
COL12A1Q99715 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL12A1Q99715 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17■□□□□ 0.31
COL12A1Q99715 POLD2P1-201ENST00000511220 997 ntBASIC17■□□□□ 0.31
COL12A1Q99715 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17■□□□□ 0.31
COL12A1Q99715 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17■□□□□ 0.31
COL12A1Q99715 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17■□□□□ 0.31
COL12A1Q99715 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17■□□□□ 0.31
COL12A1Q99715 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17■□□□□ 0.31
COL12A1Q99715 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17■□□□□ 0.31
COL12A1Q99715 AP001160.2-201ENST00000596071 487 ntBASIC17■□□□□ 0.31
COL12A1Q99715 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17■□□□□ 0.31
COL12A1Q99715 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL12A1Q99715 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL12A1Q99715 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL12A1Q99715 GALC-202ENST00000393568 2054 ntTSL 2 BASIC16.99■□□□□ 0.31
COL12A1Q99715 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL12A1Q99715 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL12A1Q99715 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.99■□□□□ 0.31
COL12A1Q99715 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL12A1Q99715 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms