Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC27.24■■□□□ 1.95
USP47Q96K76 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC27.24■■□□□ 1.95
USP47Q96K76 AL031985.4-201ENST00000642138 673 ntBASIC27.24■■□□□ 1.95
USP47Q96K76 KRT8P41-201ENST00000533985 1514 ntBASIC27.24■■□□□ 1.95
USP47Q96K76 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC27.24■■□□□ 1.95
USP47Q96K76 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP47Q96K76 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC27.24■■□□□ 1.95
USP47Q96K76 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP47Q96K76 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC27.24■■□□□ 1.95
USP47Q96K76 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC27.24■■□□□ 1.95
USP47Q96K76 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
USP47Q96K76 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP47Q96K76 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
USP47Q96K76 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC27.23■■□□□ 1.95
USP47Q96K76 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC27.23■■□□□ 1.95
USP47Q96K76 AL355075.4-201ENST00000554988 638 ntBASIC27.23■■□□□ 1.95
USP47Q96K76 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.23■■□□□ 1.95
USP47Q96K76 AP003071.4-201ENST00000562276 1284 ntBASIC27.23■■□□□ 1.95
USP47Q96K76 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC27.23■■□□□ 1.95
USP47Q96K76 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC27.23■■□□□ 1.95
USP47Q96K76 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC27.23■■□□□ 1.95
USP47Q96K76 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP47Q96K76 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP47Q96K76 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC27.22■■□□□ 1.95
USP47Q96K76 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 AC116562.2-201ENST00000507042 360 ntBASIC27.22■■□□□ 1.95
USP47Q96K76 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC27.22■■□□□ 1.95
USP47Q96K76 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP47Q96K76 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
USP47Q96K76 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP47Q96K76 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
USP47Q96K76 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC27.22■■□□□ 1.95
USP47Q96K76 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP47Q96K76 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 TSPY15P-201ENST00000457163 923 ntBASIC27.22■■□□□ 1.95
USP47Q96K76 AC011506.1-201ENST00000474329 610 ntBASIC27.22■■□□□ 1.95
USP47Q96K76 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC27.22■■□□□ 1.95
USP47Q96K76 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC27.22■■□□□ 1.95
USP47Q96K76 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP47Q96K76 SNX21-213ENST00000614929 587 ntTSL 5 BASIC27.22■■□□□ 1.95
USP47Q96K76 AC131212.4-201ENST00000623606 975 ntBASIC27.22■■□□□ 1.95
USP47Q96K76 DECR2-212ENST00000627716 352 ntTSL 2 BASIC27.22■■□□□ 1.95
USP47Q96K76 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC27.21■■□□□ 1.95
USP47Q96K76 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC27.21■■□□□ 1.95
USP47Q96K76 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC27.21■■□□□ 1.95
USP47Q96K76 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
USP47Q96K76 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
USP47Q96K76 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC27.21■■□□□ 1.95
USP47Q96K76 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC27.21■■□□□ 1.95
USP47Q96K76 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
USP47Q96K76 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USP47Q96K76 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC27.21■■□□□ 1.95
USP47Q96K76 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC27.21■■□□□ 1.95
USP47Q96K76 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
USP47Q96K76 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC27.21■■□□□ 1.95
USP47Q96K76 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC27.21■■□□□ 1.95
USP47Q96K76 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC27.21■■□□□ 1.95
USP47Q96K76 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC27.21■■□□□ 1.95
USP47Q96K76 MIR6786-201ENST00000616843 113 ntBASIC27.21■■□□□ 1.95
USP47Q96K76 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC27.21■■□□□ 1.95
USP47Q96K76 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
USP47Q96K76 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP47Q96K76 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP47Q96K76 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC27.2■■□□□ 1.94
USP47Q96K76 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC27.2■■□□□ 1.94
USP47Q96K76 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC27.2■■□□□ 1.94
USP47Q96K76 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP47Q96K76 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC27.2■■□□□ 1.94
USP47Q96K76 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USP47Q96K76 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
USP47Q96K76 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC27.2■■□□□ 1.94
USP47Q96K76 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP47Q96K76 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC27.19■■□□□ 1.94
USP47Q96K76 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USP47Q96K76 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP47Q96K76 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC27.19■■□□□ 1.94
USP47Q96K76 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms