Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 NAPSB-206ENST00000562112 1266 ntBASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 AC023632.3-201ENST00000521633 145 ntBASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 KRT16P6-202ENST00000425692 1426 ntBASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 KRT18P22-201ENST00000402024 1347 ntBASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.28■■□□□ 1.16
SH3RF1Q7Z6J0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 SLC25A3P1-201ENST00000443844 931 ntBASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.27■■□□□ 1.16
SH3RF1Q7Z6J0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.27■■□□□ 1.15
SH3RF1Q7Z6J0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 WWOX-216ENST00000569818 525 ntBASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 AC087388.1-201ENST00000571370 1112 ntBASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.26■■□□□ 1.15
SH3RF1Q7Z6J0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 FITM1-202ENST00000559294 800 ntBASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.25■■□□□ 1.15
SH3RF1Q7Z6J0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.24■■□□□ 1.15
SH3RF1Q7Z6J0 AP002982.1-201ENST00000492365 877 ntBASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms