Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.99■□□□□ 0.95
KRT39Q6A163 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
KRT39Q6A163 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
KRT39Q6A163 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.99■□□□□ 0.95
KRT39Q6A163 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.99■□□□□ 0.95
KRT39Q6A163 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
KRT39Q6A163 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
KRT39Q6A163 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.99■□□□□ 0.95
KRT39Q6A163 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.99■□□□□ 0.95
KRT39Q6A163 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
KRT39Q6A163 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
KRT39Q6A163 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.98■□□□□ 0.95
KRT39Q6A163 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.98■□□□□ 0.95
KRT39Q6A163 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
KRT39Q6A163 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 RPPH1-201ENST00000516869 333 ntBASIC20.98■□□□□ 0.95
KRT39Q6A163 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.98■□□□□ 0.95
KRT39Q6A163 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
KRT39Q6A163 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.98■□□□□ 0.95
KRT39Q6A163 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
KRT39Q6A163 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
KRT39Q6A163 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
KRT39Q6A163 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 AC104417.2-201ENST00000562989 1793 ntBASIC20.97■□□□□ 0.95
KRT39Q6A163 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
KRT39Q6A163 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT39Q6A163 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT39Q6A163 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT39Q6A163 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 AL032819.2-201ENST00000624543 2162 ntBASIC20.97■□□□□ 0.95
KRT39Q6A163 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT39Q6A163 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT39Q6A163 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT39Q6A163 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT39Q6A163 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT39Q6A163 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT39Q6A163 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.96■□□□□ 0.95
KRT39Q6A163 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
KRT39Q6A163 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT39Q6A163 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT39Q6A163 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
KRT39Q6A163 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT39Q6A163 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT39Q6A163 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT39Q6A163 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT39Q6A163 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT39Q6A163 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT39Q6A163 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT39Q6A163 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
KRT39Q6A163 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT39Q6A163 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms