Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 AC104417.2-201ENST00000562989 1793 ntBASIC18.73■□□□□ 0.59
PCDH1Q08174 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
PCDH1Q08174 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDH1Q08174 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDH1Q08174 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.73■□□□□ 0.59
PCDH1Q08174 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDH1Q08174 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
PCDH1Q08174 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PCDH1Q08174 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH1Q08174 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 KRT17P3-201ENST00000420566 1262 ntBASIC18.72■□□□□ 0.59
PCDH1Q08174 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 RNA5SP413-201ENST00000516373 109 ntBASIC18.72■□□□□ 0.59
PCDH1Q08174 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 AC069544.1-201ENST00000609399 999 ntBASIC18.72■□□□□ 0.59
PCDH1Q08174 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDH1Q08174 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH1Q08174 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
PCDH1Q08174 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PCDH1Q08174 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
PCDH1Q08174 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDH1Q08174 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDH1Q08174 PRKY-204ENST00000533551 1019 ntBASIC18.71■□□□□ 0.59
PCDH1Q08174 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDH1Q08174 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDH1Q08174 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH1Q08174 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH1Q08174 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
PCDH1Q08174 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
PCDH1Q08174 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PCDH1Q08174 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms