Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SRP54P61011 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.16■□□□□ 0.66
SRP54P61011 CYP2D8P-201ENST00000433633 1490 ntBASIC19.16■□□□□ 0.66
SRP54P61011 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 AC009237.14-201ENST00000609975 1594 ntBASIC19.15■□□□□ 0.66
SRP54P61011 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SRP54P61011 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.15■□□□□ 0.66
SRP54P61011 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.15■□□□□ 0.66
SRP54P61011 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.15■□□□□ 0.66
SRP54P61011 DGCR10-201ENST00000609839 495 ntBASIC19.15■□□□□ 0.66
SRP54P61011 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SRP54P61011 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SRP54P61011 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.15■□□□□ 0.66
SRP54P61011 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SRP54P61011 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SRP54P61011 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.14■□□□□ 0.66
SRP54P61011 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.14■□□□□ 0.66
SRP54P61011 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.14■□□□□ 0.65
SRP54P61011 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.14■□□□□ 0.65
SRP54P61011 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SRP54P61011 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.14■□□□□ 0.65
SRP54P61011 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.14■□□□□ 0.65
SRP54P61011 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.14■□□□□ 0.65
SRP54P61011 AC130371.2-201ENST00000619443 611 ntBASIC19.14■□□□□ 0.65
SRP54P61011 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.14■□□□□ 0.65
SRP54P61011 LINC01568-207ENST00000641790 1380 ntBASIC19.14■□□□□ 0.65
SRP54P61011 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.14■□□□□ 0.65
SRP54P61011 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.14■□□□□ 0.65
SRP54P61011 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SRP54P61011 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.14■□□□□ 0.65
SRP54P61011 RCC2P6-201ENST00000526625 1557 ntBASIC19.14■□□□□ 0.65
SRP54P61011 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SRP54P61011 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 RCN1P1-201ENST00000400413 996 ntBASIC19.13■□□□□ 0.65
SRP54P61011 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 AC097488.1-201ENST00000507834 756 ntBASIC19.13■□□□□ 0.65
SRP54P61011 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
SRP54P61011 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 AC010947.1-201ENST00000623454 693 ntBASIC19.13■□□□□ 0.65
SRP54P61011 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SRP54P61011 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SRP54P61011 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SRP54P61011 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SRP54P61011 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SRP54P61011 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SRP54P61011 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SRP54P61011 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.12■□□□□ 0.65
SRP54P61011 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.12■□□□□ 0.65
SRP54P61011 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SRP54P61011 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SRP54P61011 AC004951.3-201ENST00000418645 1148 ntBASIC19.12■□□□□ 0.65
SRP54P61011 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.12■□□□□ 0.65
SRP54P61011 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.12■□□□□ 0.65
SRP54P61011 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.12■□□□□ 0.65
SRP54P61011 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.12■□□□□ 0.65
SRP54P61011 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.12■□□□□ 0.65
SRP54P61011 AP005242.2-201ENST00000580065 1175 ntBASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms