Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CLRN1P58418 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 KRT17P3-201ENST00000420566 1262 ntBASIC17.35■□□□□ 0.37
CLRN1P58418 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
CLRN1P58418 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.35■□□□□ 0.37
CLRN1P58418 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.34■□□□□ 0.37
CLRN1P58418 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.34■□□□□ 0.37
CLRN1P58418 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.34■□□□□ 0.37
CLRN1P58418 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLRN1P58418 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.34■□□□□ 0.37
CLRN1P58418 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CLRN1P58418 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.34■□□□□ 0.37
CLRN1P58418 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.34■□□□□ 0.37
CLRN1P58418 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.34■□□□□ 0.37
CLRN1P58418 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.34■□□□□ 0.37
CLRN1P58418 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN1P58418 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.33■□□□□ 0.37
CLRN1P58418 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CLRN1P58418 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.33■□□□□ 0.37
CLRN1P58418 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CLRN1P58418 BCL2-203ENST00000589955 5011 ntBASIC17.33■□□□□ 0.37
CLRN1P58418 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN1P58418 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.33■□□□□ 0.37
CLRN1P58418 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.33■□□□□ 0.36
CLRN1P58418 AC026366.1-201ENST00000488803 879 ntBASIC17.33■□□□□ 0.36
CLRN1P58418 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.33■□□□□ 0.36
CLRN1P58418 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.33■□□□□ 0.36
CLRN1P58418 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
CLRN1P58418 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.33■□□□□ 0.36
CLRN1P58418 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms