Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH6P55285 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDH6P55285 ZNF815P-204ENST00000434898 1737 ntBASIC20.19■□□□□ 0.82
CDH6P55285 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH6P55285 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH6P55285 AC026366.1-201ENST00000488803 879 ntBASIC20.19■□□□□ 0.82
CDH6P55285 KRT18P16-201ENST00000510337 1294 ntBASIC20.19■□□□□ 0.82
CDH6P55285 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.19■□□□□ 0.82
CDH6P55285 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.19■□□□□ 0.82
CDH6P55285 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.19■□□□□ 0.82
CDH6P55285 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.19■□□□□ 0.82
CDH6P55285 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH6P55285 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CDH6P55285 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 AC120498.9-201ENST00000339021 3867 ntBASIC20.19■□□□□ 0.82
CDH6P55285 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH6P55285 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.18■□□□□ 0.82
CDH6P55285 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.18■□□□□ 0.82
CDH6P55285 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
CDH6P55285 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.18■□□□□ 0.82
CDH6P55285 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 PRKY-204ENST00000533551 1019 ntBASIC20.18■□□□□ 0.82
CDH6P55285 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.18■□□□□ 0.82
CDH6P55285 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CDH6P55285 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CDH6P55285 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH6P55285 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH6P55285 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 KRT17P3-201ENST00000420566 1262 ntBASIC20.17■□□□□ 0.82
CDH6P55285 TUBB8P6-201ENST00000436895 1288 ntBASIC20.17■□□□□ 0.82
CDH6P55285 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.17■□□□□ 0.82
CDH6P55285 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
CDH6P55285 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.17■□□□□ 0.82
CDH6P55285 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH6P55285 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH6P55285 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH6P55285 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
CDH6P55285 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.16■□□□□ 0.82
CDH6P55285 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
CDH6P55285 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CDH6P55285 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CDH6P55285 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms