Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.29■□□□□ 0.84
EPHB3P54753 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.29■□□□□ 0.84
EPHB3P54753 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.29■□□□□ 0.84
EPHB3P54753 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.29■□□□□ 0.84
EPHB3P54753 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.29■□□□□ 0.84
EPHB3P54753 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
EPHB3P54753 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 AC010653.2-201ENST00000623505 997 ntBASIC20.29■□□□□ 0.84
EPHB3P54753 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.29■□□□□ 0.84
EPHB3P54753 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
EPHB3P54753 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
EPHB3P54753 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
EPHB3P54753 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
EPHB3P54753 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.28■□□□□ 0.84
EPHB3P54753 AC007663.1-201ENST00000438948 1240 ntBASIC20.28■□□□□ 0.84
EPHB3P54753 BX664615.1-201ENST00000443558 458 ntBASIC20.28■□□□□ 0.84
EPHB3P54753 TSPY17P-201ENST00000450329 467 ntBASIC20.28■□□□□ 0.84
EPHB3P54753 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
EPHB3P54753 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.28■□□□□ 0.84
EPHB3P54753 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.28■□□□□ 0.84
EPHB3P54753 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.28■□□□□ 0.84
EPHB3P54753 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.28■□□□□ 0.84
EPHB3P54753 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
EPHB3P54753 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 KRT8P41-201ENST00000533985 1514 ntBASIC20.27■□□□□ 0.84
EPHB3P54753 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.27■□□□□ 0.84
EPHB3P54753 AC092667.1-201ENST00000434301 2586 ntBASIC20.27■□□□□ 0.84
EPHB3P54753 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
EPHB3P54753 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.27■□□□□ 0.84
EPHB3P54753 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
EPHB3P54753 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.27■□□□□ 0.84
EPHB3P54753 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.27■□□□□ 0.84
EPHB3P54753 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
EPHB3P54753 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.27■□□□□ 0.84
EPHB3P54753 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
EPHB3P54753 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
EPHB3P54753 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
EPHB3P54753 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
EPHB3P54753 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.26■□□□□ 0.83
EPHB3P54753 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
EPHB3P54753 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 AC099778.1-201ENST00000568593 1911 ntBASIC20.26■□□□□ 0.83
EPHB3P54753 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
EPHB3P54753 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.26■□□□□ 0.83
EPHB3P54753 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.26■□□□□ 0.83
EPHB3P54753 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.26■□□□□ 0.83
EPHB3P54753 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
EPHB3P54753 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
EPHB3P54753 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms