Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SRP9P49458 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
SRP9P49458 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SRP9P49458 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.2■□□□□ 0.34
SRP9P49458 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SRP9P49458 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SRP9P49458 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.19■□□□□ 0.34
SRP9P49458 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SRP9P49458 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SRP9P49458 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.19■□□□□ 0.34
SRP9P49458 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 C2orf69P4-201ENST00000565394 541 ntBASIC17.19■□□□□ 0.34
SRP9P49458 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.19■□□□□ 0.34
SRP9P49458 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SRP9P49458 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
SRP9P49458 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SRP9P49458 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SRP9P49458 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SRP9P49458 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.18■□□□□ 0.34
SRP9P49458 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.18■□□□□ 0.34
SRP9P49458 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SRP9P49458 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
SRP9P49458 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
SRP9P49458 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SRP9P49458 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SRP9P49458 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.18■□□□□ 0.34
SRP9P49458 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.18■□□□□ 0.34
SRP9P49458 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.18■□□□□ 0.34
SRP9P49458 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.18■□□□□ 0.34
SRP9P49458 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 AC091874.3-201ENST00000512672 1195 ntBASIC17.18■□□□□ 0.34
SRP9P49458 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.18■□□□□ 0.34
SRP9P49458 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SRP9P49458 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.18■□□□□ 0.34
SRP9P49458 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SRP9P49458 AC104581.1-202ENST00000635932 2618 ntBASIC17.17■□□□□ 0.34
SRP9P49458 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.17■□□□□ 0.34
SRP9P49458 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 DPP3P2-201ENST00000416030 1696 ntBASIC17.17■□□□□ 0.34
SRP9P49458 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
SRP9P49458 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.17■□□□□ 0.34
SRP9P49458 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.17■□□□□ 0.34
SRP9P49458 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.17■□□□□ 0.34
SRP9P49458 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.17■□□□□ 0.34
SRP9P49458 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SRP9P49458 AL032819.2-201ENST00000624543 2162 ntBASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms